Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2401 ATGGCTATGCAACCATTCGATCCTTATTACCTTTACCAGCCAGATGAACGAAGCAACATAAACACGCTCTTCGTTTCCGGTTTACCAGACGACGTGAAAGCGCGTGAGATTCACAACCTCTTCCGCCGTCGTCCTGGTTTCGATTCTTGCCAACTCAAGTATACCGGCCGCGCCAATCAGGTTGTTGCATTTGCTACGTTTTTCAATCATCAGGCAGCAATGGCAGCGTTGCACGCCCTAAATGGCGTGAAATTTGATCCTCAATCTGGGTCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGAAAACCAGGTGGTGGAGCCTACGTGGTTATAGATAAAAGGTCAAAGGGGGAAGCCAATGTTCAGGGATCGTCAAGTGATGATGGTGAAAGTGAGCCTGATGAACTATCAGAAAATGGCAGCGACCATGGCGATATAGCAACCACACAAAGTGGTGATGCTGTTGTTGGTTCTGACAATCGTGTACCTGTGGCAAGGGAGAAACATGGAAAAGGTGGTGGTGATGGAGGACCATGTTCCACTCTTTTTATTGCAAATCTTGGGCCCAATTGCACTGAGGATGAATTAAAGCAAGCTTTTTCTGGGTATGCTGGATTCAACATGGTCAAGATGCGTTCTAGAGGAGGAATGCCTGTAGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGTTAAGGTCATGGAGGAGCTTCAGGGAAGCTCACTCTCATCATCAGATCGGGGTGGCATGCATATAGAGTATCTTCTAACCTACTGGATTTTATCAATTTCTGTTCTGTTCGTAACCCTTAGCTCAAGTGACAAATGTCAAAATTCATGGTGTTCCTGGTTCGAATTCGAAATCTACTATTTGTGTATATGA 897 0.4504 MAMQPFDPYYLYQPDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQAAMAALHALNGVKFDPQSGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGEANVQGSSSDDGESEPDELSENGSDHGDIATTQSGDAVVGSDNRVPVAREKHGKGGGDGGPCSTLFIANLGPNCTEDELKQAFSGYAGFNMVKMRSRGGMPVAFADFEEIDQAVKVMEELQGSSLSSSDRGGMHIEYLLTYWILSISVLFVTLSSSDKCQNSWCSWFEFEIYYLCI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2401 298 CDD RRM_scw1_like 183 259 - -
Tpr5g2401 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Tpr5g2401 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 248 IPR000504 GO:0003723
Tpr5g2401 298 SMART rrm1_1 186 258 IPR000504 GO:0003723
Tpr5g2401 298 SMART rrm1_1 22 96 IPR000504 GO:0003723
Tpr5g2401 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Tpr5g2401 298 PANTHER RNA-BINDING PROTEIN-RELATED 14 257 - -
Tpr5g2401 298 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 14 257 - -
Tpr5g2401 298 Gene3D - 179 260 IPR012677 -
Tpr5g2401 298 MobiDBLite consensus disorder prediction 147 161 - -
Tpr5g2401 298 CDD RRM_RBPMS_like 21 96 - -
Tpr5g2401 298 SUPERFAMILY RNA-binding domain, RBD 21 246 IPR035979 GO:0003676
Tpr5g2401 298 MobiDBLite consensus disorder prediction 101 164 - -
Tpr5g2401 298 Gene3D - 16 103 IPR012677 -
Tpr5g2401 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2401 Tpr-Chr5 45659993 45665769 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2401 - - cam:101503574 466.848