Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2395 ATGGAAAATTCTCTGTCTGTGAGTTCGAGTTTAACGATCGGAGAAACACTGTGTGCGGTGTTCTTTCCACTAATCGGAATAGCTGAAGCTTTGATTTATACCTTAACCAGTTGCTTCGATTGCCGTAATCAAGATCAGAAAAAGAATAAGAACAAGTTTTCTACCTTTGAAGATATTCTCGCACTCGCTAACGATTCTCCGTTTAATGTGAATGAAATAGAGGCATTGCATGAACTGTACAAGAAGTTGAGTTGTTCGATCATTGACGATGGTCTCATCCATAAAGTCTTTGATCTCTTTGATGAAAAAAAGAATGGTGTTATAGAATTCGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTGATACTCCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGGCAGACTGGATACATTGAACGAGAAGAAGTGAGTATCCTGGCATGTCCAGGTCACAAAGGTGTTATTGGCTCCAATGTATTTTTGTTTGCCCATATACTTTTATGTTTACCGATGTTTGAAACTATTTTGTTATCCGACAACTTTTTTCAGGTTCGACAAATGGTGGTCGCCATTTTGTCAGAATGTGGCCTGAACTTGGGAAATGAAATCCTTGAAACCATTATTGATAAGACATTTCAAGATGTTGATGCTGACAAGGATGGTAAGATCAGTAAAGAAGAGTGGAGAGAATTTGTCGTTCGGAACCCTTCAATCTTGAACCACCTGACTCTTCCTAATCTGAAGGACGTAACCACAGTATTTACCAGTTTCATATTCAACACCGGAGTTGAAGATTCCCACTGGTAA 828 0.3853 MENSLSVSSSLTIGETLCAVFFPLIGIAEALIYTLTSCFDCRNQDQKKNKNKFSTFEDILALANDSPFNVNEIEALHELYKKLSCSIIDDGLIHKVFDLFDEKKNGVIEFEEFVHALSVFHPDTPLEKKIDFAFRLYDLRQTGYIEREEVSILACPGHKGVIGSNVFLFAHILLCLPMFETILLSDNFFQVRQMVVAILSECGLNLGNEILETIIDKTFQDVDADKDGKISKEEWREFVVRNPSILNHLTLPNLKDVTTVFTSFIFNTGVEDSHW* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2395 275 Gene3D - 31 273 - -
Tpr5g2395 275 ProSitePatterns EF-hand calcium-binding domain. 223 235 IPR018247 -
Tpr5g2395 275 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Tpr5g2395 275 CDD EFh 93 149 IPR002048 GO:0005509
Tpr5g2395 275 PRINTS Recoverin family signature 96 117 - -
Tpr5g2395 275 PRINTS Recoverin family signature 143 161 - -
Tpr5g2395 275 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Tpr5g2395 275 ProSiteProfiles EF-hand calcium-binding domain profile. 210 245 IPR002048 GO:0005509
Tpr5g2395 275 Pfam EF hand 93 118 IPR002048 GO:0005509
Tpr5g2395 275 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 95 - -
Tpr5g2395 275 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 95 151 - -
Tpr5g2395 275 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 190 272 - -
Tpr5g2395 275 Pfam EF-hand domain pair 128 238 IPR002048 GO:0005509
Tpr5g2395 275 PANTHER CALCINEURIN B 5 95 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tpr5g2395 275 PANTHER CALCINEURIN B 95 151 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tpr5g2395 275 PANTHER CALCINEURIN B 190 272 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tpr5g2395 275 SMART efh_1 92 120 IPR002048 GO:0005509
Tpr5g2395 275 SMART efh_1 214 242 IPR002048 GO:0005509
Tpr5g2395 275 SUPERFAMILY EF-hand 56 250 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2395 Tpr-Chr5 45610806 45615697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2395 62 273 EF-hand Containing Proteins AT4G26570 44.915 3.80e-64 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2395 K06268 - gmx:100306023 332.798