Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2392 ATGGGCTTCAAGCTAAATGTGTTGCTATTGGTGATACTTGCAACTTCACTGATTGATTATAGTGAAGCTTCTGTATCATATGATTATAAAGCTATCACCATTAATGGACAAAGAAGAATATTACTTTCTGGGTCTATTCATTATCCCAGAAGTACCCCTGAGATGTGGCCAGATCTTATCCAAAAGGCTAAAGAAGGAGGTTTAGATGTGATTCAAACTTATGTTTTCTGGAATGGACATGAACCTTCACCTGGCAAATATTATTTTGAGGGGAACTATGATTTGGTGAAGTTCATAAAGCTAGTGCAGCAAGCAGGACTATATGTTCATCTAAGAATTGGTCCATATGCTTGTGCTGAATGGAACTTTGGAGGTTTTCCTGTTTGGCTGAAGTATGTTCCAGGTATCAGCTTCAGAACAGACAATGGACCATTTAAGTTTCAAATGCAAAGATTTACTACAAAGATTGTGAATATAATGAAAGCTGAAAGGTTGTATGAGTCTCAGGGTGGTCCAATAATTCTATCTCAGATTGAAAATGAATATGGACCTATGGAGTATGAACTTGGAGCTCCTGGAAAAGCCTATACTCAATGGGCAGCTCATATGGCTGTAGGACTAGGTACCGGTGTTCCGTGGGTCATGTGCAAACAAGATGATGCTCCTGATCCTGTCATTAATACTTGCAATGGTTTCTATTGTGATTATTTCTCTCCAAACAAAGCATACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACCGGCTTTGGAGGAACGGTTCCTCATAGACCTGCTGAAGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGAGGATCCTTTATCAATTATTACATGTATCATGGTGGAACAAATTTTGGAAGAACTGCCGGTGGTCCCTTTATTGCTACAAGCTACGATTATGATGCACCTCTCGATGAATACGGGCTTCTGAGGCAGCCAAAGTGGGGTCATTTGAGGGATTTACACAGAGCAATAAAACTCTGCGAGCCTGCTTTAGTTTCTGCAGATCCTACTGTAACTCGTCTAGGAAACTATCAAGAGGCTCATGTTTTTAAATCGAAATCCGGAGCTTGTGCTGCATTTCTTGCAAACTACAACCCACGATCTTATGCAACAGTGTCGTTCGGGAATCAGCATTACAACTTACCTCCTTGGTCTGTTAGCATTCTTCCTAACTGCAAACACACTGTTTATAACACTGCAAGGGTTGGTTCGCAGAGCGCGACGATGAAGATGAGCCCTGTTCCTATTCACGGAGGACTCTCTTGGAAAGCATTTAATGAAGAGACAACAACTACTGATGATAGTTCATTCACTGTGACTGGTTTGTTGGAACAGATAAATGCAACAAGAGATTTATCTGACTATTTGTGGTACTCTACAGATGTTGTGATCAATTCCAATGAAGGATTTTTTAGGAACGGAAAGGGTCCTGTTCTTACAGTATTATCTGCTGGCCATGCTTTGCATGTTTTTATCAACGGTCAGCTCTCAGGAACTGTATATGGAAGCGTGGATTTCCCCAAACTAACTTTTAGTGAAAGTGTGAAGCTTAGAGCTGGCGTTAACAAAATCTCCCTTCTGAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAACATGGAACGCTGGTGTTCTCGGTCCAATCACGTTGAACGGACTCAATGAGGGGAGAAGGGACTTAACATGGCAGAAGTGGTCATACAAGGTTGGTCTTAAAGGCGAAGCTTTGAGTCTCCATTCTCTCAGTGGAAGTTCCTCCGTTGATTGGCTTCAAGGATATTTAGTTTCTCGAAAGCAGCCATTGACTTGGTTCAAAACTACTTTTGACGCACCTGCTGGAGTTGCACCGTTGGCTTTAGACATGAACAGCATGGGAAAAGGTCAAGTTTGGTTAAACGGACAGCATCTTGGACGATACTGGCCTGCTTATAAAGCATCTGGTTCTTGTGATTATTGCAATTATGCAGGAACTTATAATGAGAAAAAATGTGGAACTAACTGTGGCGAGGCTTCTCAACGATGGTATCATGTTCCTCATTCCTGGCTGAAACCAACAGGGAATTTGTTGGTTATGTTTGAGGAATTGGGTGGGGATCCAAATGGCGTGGTTTTAGTTAGAAGGGATATCAATAGCGTGTGTGCTGATATTTATGAGTGGCAACCAAATCTTGTTAGCTATCAAATGCAAGCTTCTGGTAAAGTTAAGGTACCAGTGAGTCCGAAAGCACATTTGTCATGTGGTCCTGGACAGAAAATATCATCGATCAAATTTGCTAGCTTTGGTACACCAGTAGGATCATGTGGAAACTACCGCGAAGGAAGTTGTCATGCTCACAAGTCATATGATGCCTTTCAAAAGAATTGTGTTGGTCAAAGTACGTGCACCGTGACAGTTTCACCTGAAATTTTCGGAGGTGATCCATGTCCAAATGTCATGAAGAAACTCGCAGTAGAAGCCATTTGCACCTGA 2517 0.418 MGFKLNVLLLVILATSLIDYSEASVSYDYKAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYACAEWNFGGFPVWLKYVPGISFRTDNGPFKFQMQRFTTKIVNIMKAERLYESQGGPIILSQIENEYGPMEYELGAPGKAYTQWAAHMAVGLGTGVPWVMCKQDDAPDPVINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTGFGGTVPHRPAEDLAFSIARFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLRDLHRAIKLCEPALVSADPTVTRLGNYQEAHVFKSKSGACAAFLANYNPRSYATVSFGNQHYNLPPWSVSILPNCKHTVYNTARVGSQSATMKMSPVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINSNEGFFRNGKGPVLTVLSAGHALHVFINGQLSGTVYGSVDFPKLTFSESVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPITLNGLNEGRRDLTWQKWSYKVGLKGEALSLHSLSGSSSVDWLQGYLVSRKQPLTWFKTTFDAPAGVAPLALDMNSMGKGQVWLNGQHLGRYWPAYKASGSCDYCNYAGTYNEKKCGTNCGEASQRWYHVPHSWLKPTGNLLVMFEELGGDPNGVVLVRRDINSVCADIYEWQPNLVSYQMQASGKVKVPVSPKAHLSCGPGQKISSIKFASFGTPVGSCGNYREGSCHAHKSYDAFQKNCVGQSTCTVTVSPEIFGGDPCPNVMKKLAVEAICT* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2392 838 SUPERFAMILY Galactose-binding domain-like 399 570 IPR008979 -
Tpr5g2392 838 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Tpr5g2392 838 Gene3D - 743 838 IPR043159 -
Tpr5g2392 838 ProSiteProfiles SUEL-type lectin domain profile. 752 838 IPR000922 GO:0030246
Tpr5g2392 838 Pfam Galactose binding lectin domain 760 837 IPR000922 GO:0030246
Tpr5g2392 838 Gene3D Glycosidases 18 288 - -
Tpr5g2392 838 Gene3D - 289 415 - -
Tpr5g2392 838 Gene3D - 445 582 - -
Tpr5g2392 838 Gene3D - 596 729 - -
Tpr5g2392 838 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Tpr5g2392 838 SUPERFAMILY Galactose-binding domain-like 579 746 IPR008979 -
Tpr5g2392 838 PANTHER BETA-GALACTOSIDASE 6 832 - -
Tpr5g2392 838 SUPERFAMILY (Trans)glycosidases 25 341 IPR017853 -
Tpr5g2392 838 Pfam Beta-sandwich domain in beta galactosidase 344 415 IPR041392 -
Tpr5g2392 838 PANTHER BETA-GALACTOSIDASE RELATED 6 832 IPR001944 GO:0004553|GO:0005975
Tpr5g2392 838 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Tpr5g2392 838 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Tpr5g2392 838 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Tpr5g2392 838 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Tpr5g2392 838 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Tpr5g2392 838 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Tpr5g2392 838 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Tpr5g2392 838 PRINTS Glycosyl hydrolase family 35 signature 615 629 IPR001944 GO:0004553|GO:0005975
Tpr5g2392 838 PRINTS Glycosyl hydrolase family 35 signature 642 658 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2392 Tpr-Chr5 45567180 45573199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2392 7 838 Glycoside Hydrolase AT3G13750 80.409 0.0 1424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2392 - - gmx:100785688 1591.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2392 5 45567180 45573199 Tpr5g2392 5 45567180 45573199 ECH
Tpr7g4843 7 56405224 56410563 Tpr5g2392 5 45567180 45573199 PCT