Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2386 ATGGCGAATAGTGACGCTTGTTGTTCAACTCAGCTTATTGATGGAGATGGCGTATTCAATGCTTCTGGAATTGACAAGTTTATGAAGGAAGTTAAACTGAGTGAATGCGGACTTTCATATGCTGTAGTTTCTATTATGGGGCCACAGAGTAGTGGCAAGAGCACACTATTAAATAATTTGTTTAGTACCAATTTCAGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTGCTGGCATAGAGCCTTGTACGATTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTCGAAAAGCAGAGTGCTCTGTTTGCTCTTGCTGTCTCAGATATAGTGCTGATAAACATGTGGTGCCATGATATTGGCCGTGAGCAAGCTGCAAATAAGCCTCTTTTGAAAACTGTCTTTCAGGTTATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTATTTGTCATACGTGATAAAACAAGGACACCACTTGAAAACTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGACACCCCGCTAAGTGAATTTTTCAATGTTCAAGTTGTTGCGCTTTCTAGTTTTGAAGAAAAGGAAGAGCAATTTAGGGAGCAGGTTGCTAGCTTGAGGCAGCGTTTTCATCAGTCTATTGCTCCTGGTGGACTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGATTTTCGTTTAGTGCTCAGGAAATATGGAAAGTCATCAAGGAAAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCCACTGTACGGTGTGAAGAAATTGCGAATGAGAAATATGCTGCTTTTGTTGAAAATGAGGAATGGAGTCAATTGGAAGAGACTGTTCAATCCGAACCTGTTTCTGGATTTGGGAAAAAGATTAATTCACTCCTTCATGCTTGTTTTTCAGAGTATGATGCCGAAGCCACTTATTTTGATGAAGGTGTGAGAACTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTGCAACTTATCCAACCAGCGTACCAATCTGCACTTGGACATGTTAGATCTGGAACTTTGGACAGATTCAAGGAGGCATTTGAAAAGGCTCTGAAAGGAGGGGGAAGGTTTTCTGAAGCTGCTAATAATTGCGTTGAGTCTTGTGTGGCTCAATTTGATGAAAAATGTGCAGATGTTGTTATTGAACTAGCAAATTGGGATACATCTAAAGTACGAGAGAAACTGTTGCGTGATATTGATGCACATGTTGCATCTGTGCGTGAAGCTAAGATTTCTGAACTTACTTCTTCATATGAGGAAAAACTGAAACTATCTTTGTCTGGACCTGTCGAAGCTCTTTTGGATGGAGCTAATAGTGATACTTGGCCATCAGTAAGGAGCCTTCTTAAGCGTGAGATGCAATCAGCAGTTTTAGGGTATTCTACTGCGCTTAATGGGTTTGATATGGATGAAGAAACAAGACAAAACATGATTTCGAGTTTAGAGGATTTTGCAAGGGGTGTGGTAGAAGGAAAGGCTAGGGAAGAAGCTGGAAGGGTTTTGATCCGTATGAAAGACAGGTTTACAATGTTATTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGGAAAGAAGATATTCGATCCATCACTAAAACTGCTCGCTCTGCTTCTTTGAAGTTGCTAGCTGTTATGGCTGCAATTCGTTTGGATGATGGTGATAAAGATAATATTGAGAAAACATTAGCAGTTGCTTTGCTGGATACATCAGGCAATCCTATTAGGAGTATCACAGTGGCTGATCCGCTAGCTACTAGCAGTTGGGAAAAGATTCCAGCATCTAAGACATTGATTACACCTGTCCAATGCAAATCGCTGTGGAGGCAATTCAAGATGGAGACAGAGTACAGTGTTTCTCAAGCCATTTCTGCACAGGAGGCCAACAAGCGTAATAACAACTGGTTACCTCCCCCATGGGCAATACTTGCTTTGGTTATTCTGGGATTCAATGAATTTATGACTCTTCTGAAAAATCCCTTGTATTTGGGTGTCATCTTTGTTATTTTTCTTCTCCTTAAAGCCCTGTGGGTGCAACTTGACATCGCCGGTGAATTTCGCCATGGAGTAGTTCCAGGACTCATTTCCTTGTCCACCAAGTTTGTTCCAACTATCATGAACCTTATCAAAAGACTAGCAGAGGAGGGTGCCGGTGCCGGTGCCGGTGCCCCTGCTGCTAATGAAAATCCTCAGAGAAGCTCATCAAAAAGCAACTCCAATGCTGTTCCTGTTGGTAGTTCTGTTTCATCTAGTTCTTCATCTAACGTAACTTCATTGGATAACGGAAAACGACATACCAGTTCATCAAAAGATGAGTAA 2448 0.4179 MANSDACCSTQLIDGDGVFNASGIDKFMKEVKLSECGLSYAVVSIMGPQSSGKSTLLNNLFSTNFREMDAFKGRSQTTKGIWMARCAGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKDTPLSEFFNVQVVALSSFEEKEEQFREQVASLRQRFHQSIAPGGLAGDRRGVVPASGFSFSAQEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYAAFVENEEWSQLEETVQSEPVSGFGKKINSLLHACFSEYDAEATYFDEGVRTAKQKQLQEKLLQLIQPAYQSALGHVRSGTLDRFKEAFEKALKGGGRFSEAANNCVESCVAQFDEKCADVVIELANWDTSKVREKLLRDIDAHVASVREAKISELTSSYEEKLKLSLSGPVEALLDGANSDTWPSVRSLLKREMQSAVLGYSTALNGFDMDEETRQNMISSLEDFARGVVEGKAREEAGRVLIRMKDRFTMLFSHDSDSMPRVWTGKEDIRSITKTARSASLKLLAVMAAIRLDDGDKDNIEKTLAVALLDTSGNPIRSITVADPLATSSWEKIPASKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANKRNNNWLPPPWAILALVILGFNEFMTLLKNPLYLGVIFVIFLLLKALWVQLDIAGEFRHGVVPGLISLSTKFVPTIMNLIKRLAEEGAGAGAGAPAANENPQRSSSKSNSNAVPVGSSVSSSSSSNVTSLDNGKRHTSSSKDE* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2386 815 Pfam Sey1 three-helix bundle domain 323 758 IPR046758 -
Tpr5g2386 815 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 3 791 - -
Tpr5g2386 815 CDD GBP 36 239 - -
Tpr5g2386 815 Coils Coil 218 238 - -
Tpr5g2386 815 MobiDBLite consensus disorder prediction 762 815 - -
Tpr5g2386 815 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Tpr5g2386 815 Gene3D - 18 249 IPR027417 -
Tpr5g2386 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 249 IPR027417 -
Tpr5g2386 815 Hamap Protein SEY1 [SEY1]. 9 760 IPR008803 -
Tpr5g2386 815 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Tpr5g2386 815 MobiDBLite consensus disorder prediction 770 806 - -
Tpr5g2386 815 PANTHER PROTEIN SEY1 3 791 IPR008803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2386 Tpr-Chr5 45513246 45522194 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2386 K22698 - gmx:100777656 1312.75