Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2356 ATGAATATATTCTCTACTATTTGGTTATTGCCTCTCTTCACTTTCATTTTTGTCAATGATATTCTTCCTATTGAAGCTACTCACCATGTTTATAGAAACCTTCAATCTTCTGATGATTCAACAGATCAACCTTACAGAACTGCTTATCATTTCCAACCTCCCAAGAATTGGATCAATGATCCTAATGGACCATTGATTTACAAAGGACTCTATCATCTATTCTATCAATACAACCCAAAAGGTGCAGTTTGGGGAAATATTGTGTGGGCACATTCAATTTCAACTGATCTAGTTAACTGGACCCCACTAGATCCAGCCATCTTTCCATCTCAACCGTCGGATGTAAATGGTTGTTGGTCAGGATCAGCCACAATATTACATGGTAACAAACCAGCTATTTTGTACACTGGAATTAATAAATTTAATCACCAAGTACAAAATATAGCATACCCTAAAAATTTAAATGACCCTTTTCTTAGGGAATGGATTAAGTCACCAAAAAATCCATTAATGGAACCAACTATTGAAAATAAAATTAATGCAAGTTCATTTAGGGACCCTACTACTGGTTGGTTAGGAAAAGATGGACATTGGAGAATACTTGTTGGTAGCAAAAGAAATACTAGAGGAGTTGCAATTTTATATAAGAGTAAAGATTTTATTAATTGGAATAAATCAAAACACCCTTTACATTCAGCTAAGGGTACTGGAATGTGGGAGTGTCCTGATTTTTTTCCAGTTTTGAAAATTGGTAAATTTGGTGTTGACACATCATTAAATAATGATGATGTTAGACATGTTTTGAAGGTTAGTTTAGATGATAAAAAACATGATTATTATTTAATTGGGAGTTATAATGAAGGAAAAGACAAATTTACCCCTGATCATGGGTTTGAGGAGGTTAGTAGTGAACATGTTTTGAGATATGATTATGGAAAATATTATGCTTCAAAAACTTTCTTTGATTATGGGAAGAATAGAAGGATTTTGCTTGGTTGGGTTAATGAATCTTCAAGTGTTGCTGATGATATCAAGAAAGGATGGTCTGGAATCCATACAATTCCAAGGGCAATATGGTTGCACAAGTCAGGAAAACAGTTGGTACAATGGCCAGTTGTGGAACTTGAGAAGCAACGACTAAATCATGTTAACTTGCCCACCAAATTTCTCAAGGGAGGTGAACTGTTGCAAATTAATGGTATCACAGCAGCACAGGCTGATGTTGAAATTTCATTTGAAGTGAATAACATCAGAGATGCTGAAGTTTTGGACAAGTGGACAGACCCTCAAATTTTATGTAGCCAAAGTTCATCAAGGAAAAATGGATTGGGACCTTTTGGTCTTCTTGTTTTTGCTTCAAAGGGATTGAAAGAGTTCACATCAGTGTTTTTTAGAATATTCAAACACCAACAAAAACCTTTGGTCCTCTTTTGTAGTGACCAAAGCAGGTCTTCTTTGAATAAAGATAATGATCTGACCACTTATGGAACTTTTATTGATGTGGATGTTCTGAATGTGAAGCTGTCATTGAGAAGTTTGATTGATCACTCTGTGGTAGAGAGTTTTGGAGGAGAAGGGAGAGCATCCATCACAGCCAGAGTTTATCCCACATTGGCCATCAATGATAAAGCATTACTTTATGCTTTCAATAATGGAACTGCTGGTGTAAAGATCACAAGCTTGAATGCTTGGAGCATGAAGAAAGCACAATTAAATGGAAAGTTATAA 1728 0.3542 MNIFSTIWLLPLFTFIFVNDILPIEATHHVYRNLQSSDDSTDQPYRTAYHFQPPKNWINDPNGPLIYKGLYHLFYQYNPKGAVWGNIVWAHSISTDLVNWTPLDPAIFPSQPSDVNGCWSGSATILHGNKPAILYTGINKFNHQVQNIAYPKNLNDPFLREWIKSPKNPLMEPTIENKINASSFRDPTTGWLGKDGHWRILVGSKRNTRGVAILYKSKDFINWNKSKHPLHSAKGTGMWECPDFFPVLKIGKFGVDTSLNNDDVRHVLKVSLDDKKHDYYLIGSYNEGKDKFTPDHGFEEVSSEHVLRYDYGKYYASKTFFDYGKNRRILLGWVNESSSVADDIKKGWSGIHTIPRAIWLHKSGKQLVQWPVVELEKQRLNHVNLPTKFLKGGELLQINGITAAQADVEISFEVNNIRDAEVLDKWTDPQILCSQSSSRKNGLGPFGLLVFASKGLKEFTSVFFRIFKHQQKPLVLFCSDQSRSSLNKDNDLTTYGTFIDVDVLNVKLSLRSLIDHSVVESFGGEGRASITARVYPTLAINDKALLYAFNNGTAGVKITSLNAWSMKKAQLNGKL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2356 575 Pfam Glycosyl hydrolases family 32 N-terminal domain 50 371 IPR013148 -
Tpr5g2356 575 Gene3D Glycosyl hydrolase domain; family 43 54 381 IPR023296 -
Tpr5g2356 575 SUPERFAMILY Concanavalin A-like lectins/glucanases 371 568 IPR013320 -
Tpr5g2356 575 SUPERFAMILY Arabinanase/levansucrase/invertase 41 372 IPR023296 -
Tpr5g2356 575 ProSitePatterns Glycosyl hydrolases family 32 active site. 50 63 IPR018053 GO:0004553|GO:0005975
Tpr5g2356 575 Gene3D - 382 566 - -
Tpr5g2356 575 CDD GH32_Fruct1-like 56 360 - -
Tpr5g2356 575 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 4 572 - -
Tpr5g2356 575 SMART glyco_32 50 526 IPR001362 GO:0004553|GO:0005975
Tpr5g2356 575 PANTHER CELL-WALL INVERTASE 4 572 - -
Tpr5g2356 575 Pfam Glycosyl hydrolases family 32 C terminal 394 565 IPR013189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2356 Tpr-Chr5 45097099 45102628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2356 65 572 Glycoside Hydrolase AT3G13790 64.410 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2356 K01193 - gmx:547681 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4828 7 56280334 56284667 Tpr5g2356 5 45097099 45102628 PCT