Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2344 ATGGCATCCAACGGCTTGTGTCCTTCAATTAAAAACATTCTTCTTTTGGATTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAGTTCAAAATTAGCTTTTGAGAAGTTTGTGTTCACTAAGACTGTTAAGACAAATGCACGGACAGAAGCTGAGATAACACTACTCGAGAACAATATCATTGTTTACAAATTTGTGCAAGACTTGCATTTCTTTGTAACGGGTGGTGATGATGAGAATGAGCTCATTTTGTCATCTGTTCTTCAAGGTTTCTTTGACGCAGTCACCCTTTTGCTGAGGAACAATGTTGACAAAAGTGAGGCACTTGAGAACTTGGATCTCATTCTTTTATGCCTTGACGAGATCGTTGATGGAGGGATTATACTTGAAACAAATGGACCTCTTATCGCTGAAAAAGTAACCTCCCATAACATGGATGCCGATGCTCCCTTATCAGAACAGACACTAACTCAGGCATGGGCTACAGCCAGAGACACTTTCACAAGAACTCTTTTAACATGA 543 0.407 MASNGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNSSKLAFEKFVFTKTVKTNARTEAEITLLENNIIVYKFVQDLHFFVTGGDDENELILSSVLQGFFDAVTLLLRNNVDKSEALENLDLILLCLDEIVDGGIILETNGPLIAEKVTSHNMDADAPLSEQTLTQAWATARDTFTRTLLT* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2344 180 Gene3D - 2 150 - -
Tpr5g2344 180 PANTHER CLATHRIN ADAPTOR COMPLEX SMALL CHAIN 5 180 - -
Tpr5g2344 180 SUPERFAMILY SNARE-like 10 150 IPR011012 -
Tpr5g2344 180 CDD Zeta-COP 11 146 - -
Tpr5g2344 180 PANTHER ZETA-COAT PROTEIN 5 180 IPR039652 GO:0006890|GO:0030126
Tpr5g2344 180 Pfam Clathrin adaptor complex small chain 10 151 IPR022775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2344 Tpr-Chr5 44940316 44943578 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2344 K20472 - gmx:100775726 317.775