Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2330 ATGTTTTCAGGGGTGGCAGGTATGATCAATAGGGGCCAAAAATTGAAGGGAACTGTGGTGTTGATGCAAAAAAATGTGTTGGATATCAATGAACTCACTGCAGTTAAAAGTGATCCAGTTGGTATAATTGGTGGTGTCTTTGGTGCCGTTGGTGGTGCTGTTGGTACTGTTGTTGATACTGCTACTTCCTTCTTAGGTCGTAATGTGGCTCTTAAATTGATTAGTGCTACAGTTGCTGATGGAAGTGGAAAAGGGAAAGTGGGAAAACAAACATTTTTGGAAGGTCTTCTTTCCTCCATACCAACATTGGGAGACAAACAATCTGCTTATGATATTCATTTTGAATGGAATACTGACATGGGAATTCCTGGAGCATTTTATATAGAAAATTTCTTGCAACATGAGTTCTACCTAGTGAGTTTGACCCTTGAAGATGTTCCAAACCATGGATCCATCCACTTTGTTTGCAACTCATGGATTTACAATGATAAAAAATATAAAAGTGACCGCATCTTTTTTGCTAACAAGACATATCTTCCGAGTGAAATACCGGCTCCATTAGCCTACTACGTAGAAGAAGAATTGAAGACTTTAAGAGGAGATGGAAAAGGAGAGCGCAAAGAATGGGAAAGAGTCTATGATTATGATGTCTACAATGATTTGGGTGATCCTGACTCAAAAGCTGCCTTGGCTCGTCCTGTTCTTGGAGGATCAAGCACCTTGCCTTATCCTCGAAGAGGCAGAACAGGCCGAAAAGCAACTAAAAAAGATCCTAAGAGTGAGAGTCGGAGCGGCTTTGTTTACCTTCCAAGAGATGAATCATTTGGTCACACGAAGTCGTCAGACTTTCTTGTTTACATACTCAAATCTGCATCTCAGAATATCGTACCTCGATTACGTTCTGTGGTTACAGGACAATTCAATCAGCCAGAATTTAACACCTTTGCAGATGTGCGTTCGCTCTATGATGGTGGAATTAAAGTACCAACCAATTTTCTTAGTGATATCGCCCCAATACCATTGTTCAAGGAACTTTTTCGATCTGATGGTGAATCGGCCCTTAAATTTGTACCACCTAAAGTGGTCCAAGTCGATCATTCGGCATGGATGACTGATGAGGAATTTGCAAGGGAGATGATTGCTGGTGTGAATCCACACATCATCAAAAAACTTGAGGAGTTCCCACCAAAGAGCAAGTTAGATAGCCAACTATATGGTGATAACACCAGTACCATAACCAAAGAACAATTGGAGCCAAACTTGGGTGGAGTCACTGTAGAACAGGCTCTCCAAAACAACAAACTGTACATCCTTGATCACCATGACATATTATTTCCATATTTGAAAAAAATAAATGCAACTGAGACAAAGGCCTATGCTACTAGAACCATCCTTTTCTTGCAAAATGATGGAACTTTGAAGCCATTGGCAATTGAACTAAGTAAGCCGCAAGATGGTAGTAATGGCCCTGTTAGTGAAGTTTACTTGCCTGCAAGTGAAGGTGTCGAGGCTCGTATTTGGCTACTTGCTAAAGCTTATGTAGTTGTAAATGATTCCTGCTATCACCAACTTGTTAGCCATTGGTTGAATACTCATGCTGTTGTTGAGCCATTCATCATAGCAACTAATAGGCATCTTAGTGTGGTTCACCCTATTCACAAACTTTTGCTTCCACATTACCGCGACACAATGAACATAAATTCACTTGCAAGGAATGTCCTAGTCAATGCTGAGGGTATTATAGAATCAACATTCTTGTGGGGAGGATATTCTTTGGAAATGTCTGCTGTTTCATATAGGGATTGGGTTTTCCCTGATCAAGGACTACCTAATGACCTACTCAAAAGAGGAGTGGCTGTTGAGGATCCAGCTTCACCACACGGCATTCGTCTTTTGATAGAGGATTATCCTTATGCTTCTGATGGACTAGAGATATGGGCTGCTATCAAGTCATGGGTTACAGAATATGTGAATTTCTACTACAAATCAGATGCTGCTATTACACAAGATGCTGAACTCCAAGCATTCTGGAAAGAACTTGTAGAGGTGGGACATGGTGATTTGAAGAATGCTACATGGTGGTTTAAGATGCAAACTCGTGCGGAGTTGATTGAAGCTAGCACCATCCTCATATGGATTGCTTCAGCACTTCACGCAGCTGTTAATTTTGGACAGTATCCTTATGGAGGATACATCCTTAACCGACCCACTAAGAGCAGGAGATTCATGCCTGTGAAAGGATCCCCCGAGTATGATGAGCTTGCTAAGGACTACGAGAAGGCATATTTGAGGACAATCACGCCAAAGAACGATACCCTTGTTGACCTTACCATTATAGAGGTTTTGTCAAGGCATGCTTCTGATGAGCAATACCTCGGACAAAGAATCGAAGGTGATCTTTGGACTTCAGATGCCGCACCAGTAGAGGCCTACAAGAAGTTTGGAAGGAAATTGGCTGAAATTGAGGAAAAGCTCGTTCAAAGGAACAATGACGAGTCATTGAGAAACAGGTATGGGCCTGTGAAGTTGCCATACACTCTCCTTTATCCTTCTAGTGAAGAAGGATTGACTTTCAGAGGCATTCCTAACAGTGTCTCCATCTAA 2604 0.4155 MFSGVAGMINRGQKLKGTVVLMQKNVLDINELTAVKSDPVGIIGGVFGAVGGAVGTVVDTATSFLGRNVALKLISATVADGSGKGKVGKQTFLEGLLSSIPTLGDKQSAYDIHFEWNTDMGIPGAFYIENFLQHEFYLVSLTLEDVPNHGSIHFVCNSWIYNDKKYKSDRIFFANKTYLPSEIPAPLAYYVEEELKTLRGDGKGERKEWERVYDYDVYNDLGDPDSKAALARPVLGGSSTLPYPRRGRTGRKATKKDPKSESRSGFVYLPRDESFGHTKSSDFLVYILKSASQNIVPRLRSVVTGQFNQPEFNTFADVRSLYDGGIKVPTNFLSDIAPIPLFKELFRSDGESALKFVPPKVVQVDHSAWMTDEEFAREMIAGVNPHIIKKLEEFPPKSKLDSQLYGDNTSTITKEQLEPNLGGVTVEQALQNNKLYILDHHDILFPYLKKINATETKAYATRTILFLQNDGTLKPLAIELSKPQDGSNGPVSEVYLPASEGVEARIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINSLARNVLVNAEGIIESTFLWGGYSLEMSAVSYRDWVFPDQGLPNDLLKRGVAVEDPASPHGIRLLIEDYPYASDGLEIWAAIKSWVTEYVNFYYKSDAAITQDAELQAFWKELVEVGHGDLKNATWWFKMQTRAELIEASTILIWIASALHAAVNFGQYPYGGYILNRPTKSRRFMPVKGSPEYDELAKDYEKAYLRTITPKNDTLVDLTIIEVLSRHASDEQYLGQRIEGDLWTSDAAPVEAYKKFGRKLAEIEEKLVQRNNDESLRNRYGPVKLPYTLLYPSSEEGLTFRGIPNSVSI* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2330 867 Gene3D - 500 866 - -
Tpr5g2330 867 ProSiteProfiles PLAT domain profile. 52 174 IPR001024 GO:0005515
Tpr5g2330 867 ProSitePatterns Lipoxygenases iron-binding region signature 1. 522 536 IPR020833 GO:0016702|GO:0046872
Tpr5g2330 867 PRINTS Lipoxygenase signature 504 521 IPR013819 GO:0016702|GO:0046872
Tpr5g2330 867 PRINTS Lipoxygenase signature 522 539 IPR013819 GO:0016702|GO:0046872
Tpr5g2330 867 PRINTS Lipoxygenase signature 542 562 IPR013819 GO:0016702|GO:0046872
Tpr5g2330 867 Gene3D - 368 499 - -
Tpr5g2330 867 SMART LH2_4 13 175 IPR001024 GO:0005515
Tpr5g2330 867 Gene3D - 179 278 - -
Tpr5g2330 867 PRINTS Plant lipoxygenase signature 144 162 IPR001246 GO:0016491
Tpr5g2330 867 PRINTS Plant lipoxygenase signature 170 191 IPR001246 GO:0016491
Tpr5g2330 867 PRINTS Plant lipoxygenase signature 209 225 IPR001246 GO:0016491
Tpr5g2330 867 PRINTS Plant lipoxygenase signature 242 261 IPR001246 GO:0016491
Tpr5g2330 867 PRINTS Plant lipoxygenase signature 309 330 IPR001246 GO:0016491
Tpr5g2330 867 PRINTS Plant lipoxygenase signature 354 370 IPR001246 GO:0016491
Tpr5g2330 867 PRINTS Plant lipoxygenase signature 393 412 IPR001246 GO:0016491
Tpr5g2330 867 PRINTS Plant lipoxygenase signature 459 483 IPR001246 GO:0016491
Tpr5g2330 867 PRINTS Plant lipoxygenase signature 779 793 IPR001246 GO:0016491
Tpr5g2330 867 Pfam Lipoxygenase 187 850 IPR013819 GO:0016702|GO:0046872
Tpr5g2330 867 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 178 IPR036392 GO:0005515
Tpr5g2330 867 SUPERFAMILY Lipoxigenase 179 867 IPR036226 -
Tpr5g2330 867 CDD PLAT_LH2 14 175 IPR042057 -
Tpr5g2330 867 Gene3D - 279 367 IPR027433 -
Tpr5g2330 867 Pfam PLAT/LH2 domain 82 173 IPR001024 GO:0005515
Tpr5g2330 867 Gene3D PLAT/LH2 domain 4 178 - -
Tpr5g2330 867 PANTHER LIPOXYGENASE 4 867 IPR000907 GO:0016702|GO:0046872
Tpr5g2330 867 MobiDBLite consensus disorder prediction 241 263 - -
Tpr5g2330 867 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 4 867 - -
Tpr5g2330 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 177 867 IPR013819 GO:0016702|GO:0046872
Tpr5g2330 867 ProSitePatterns Lipoxygenases iron-binding region signature 2. 549 559 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2330 Tpr-Chr5 44753450 44757511 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2330 14 867 Acyl Lipid Metabolism Gene Families AT3G22400 54.960 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2330 K15718 - gmx:100816880 1433.31