Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2313 ATGGCTTCTCATTTACTCAATCACTCCAAAAAGTTACGAAATGCTTCGAGCTTGTTACACCAGGACCGTGCTCTTTTGATTCGTTGGTTTTGCAGCGATGTTCAACCTTCATCTATCAACCGAAATCGTGATGTGCGGAAAACTCGATTACAAGATTGTGAGTCTTCAGCGAGAAACCGTGTCTCTGAATCAGCTCCCAGCTTTACTAAATCATCTTTTGGTGTACAGAAGAGAAACATGTCCACCACGAAAAGGGGTTACATGAGGGAGTCGTTGTTGAATGGAGAGATTTCACAAAATTCACAGGTTATGTCAAGGAGAGGCTATGCATCAGCTTCAGATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCGCCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAGTTTCTCCTGGTGAAGTGCTTTGTGAAGTTGAAACTGATAAAGCTACAGTTGAAATGGAGTGCATGGAGGAAGGTTATCTGGCCAAAATAGTACGTAAGGAGGGAGAGAAAGAAATTAAAGTTGGTGAGGTAATTGCTGTAACTGTTGAAGATGAGGAGGACATTGCAAAATTTAAAGATTACCAACCTTCAGCATCTGAATCTAGTGCCCCCCCTGCCAAAGAATCATCTGCCCCACCTCCCCCAAAGAAAGAGGCGGTAGAGGAGCCTGCCCGAGAACCTGAGCCAAAGGCTTCCAAACCTAGTGCACCACCTTCATCTGGAGATCGCATATTTGCTAGTCCCCTTGCGAGAAAGTTGGCTGAAGAGAAAAATGTGAATCTCTCCAGCATTAAAGGAACTGGACCTGATGGACTCATTGTCAAGGGTGACATTGACGATTACTTGGCTTCTGGTGCCAAAGAAGTTTCAGCACCCTCAAAGGCCAAGGCTGCAACAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATAAGGAAGGTCACAGCTTCACGTTTGTTGCTATCAAAACAAACAATTCCTCATTACTATTTGACTGTAGATACATGTGTTGACAAACTCATAAGCTTGCGTGCCCAACTCAATTCATTGCAGGAAGCCTCTGGTGGTTCCCGCATATCAGTAAATGACCTTGTAATCAAGGCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAGTGTAACAGTTCATGGACAAATGACTATATTCGCCAGTATCATAATGTGAATATTAATGTTGCCGTGCAGACTGATCATGGACTCTTTGTTCCAGTAGTCAGGGATGCAGACAAGAAAGGTCTCTCTACAATAGGTGAAGAGGTGAAACAGTTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCCCAAGATTATGAGGGAGGTACATTTACAGTGTCTAACTTGGGAGGGCCATTCGGTGTCAAACAGTTCTGTGCCATTGTCAATCCTCCTCAATCTGGCATTCTTGCAGTTGGATCTGCTGAGAGGAGGGTCGTTCCAGGTTCGGGTGCTGAAGAATTCAAGTTTGCTTCCTTCATGGCTGTGACCCTAAGTTGTGATCATCGAGTAATAGATGGGGCGATTGGTGCGGAATGGTTAAAAGCATTCAAGGGCTATATTGAGAACCCAGAAACCATGCTGTTGTAA 1644 0.4453 MASHLLNHSKKLRNASSLLHQDRALLIRWFCSDVQPSSINRNRDVRKTRLQDCESSARNRVSESAPSFTKSSFGVQKRNMSTTKRGYMRESLLNGEISQNSQVMSRRGYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVRKEGEKEIKVGEVIAVTVEDEEDIAKFKDYQPSASESSAPPAKESSAPPPPKKEAVEEPAREPEPKASKPSAPPSSGDRIFASPLARKLAEEKNVNLSSIKGTGPDGLIVKGDIDDYLASGAKEVSAPSKAKAATDAALDYTDIPVSQIRKVTASRLLLSKQTIPHYYLTVDTCVDKLISLRAQLNSLQEASGGSRISVNDLVIKAAALALRKVPQCNSSWTNDYIRQYHNVNINVAVQTDHGLFVPVVRDADKKGLSTIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIVNPPQSGILAVGSAERRVVPGSGAEEFKFASFMAVTLSCDHRVIDGAIGAEWLKAFKGYIENPETMLL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2313 547 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 257 294 IPR004167 GO:0016746
Tpr5g2313 547 Gene3D - 245 298 IPR036625 GO:0016746
Tpr5g2313 547 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 47 547 - -
Tpr5g2313 547 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 143 172 IPR003016 -
Tpr5g2313 547 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL 47 547 - -
Tpr5g2313 547 SUPERFAMILY Single hybrid motif 117 212 IPR011053 -
Tpr5g2313 547 MobiDBLite consensus disorder prediction 206 254 - -
Tpr5g2313 547 Pfam e3 binding domain 256 290 IPR004167 GO:0016746
Tpr5g2313 547 SUPERFAMILY CoA-dependent acyltransferases 316 547 - -
Tpr5g2313 547 Gene3D - 300 545 IPR023213 -
Tpr5g2313 547 Pfam Biotin-requiring enzyme 120 192 IPR000089 -
Tpr5g2313 547 CDD lipoyl_domain 119 192 - -
Tpr5g2313 547 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 250 295 IPR036625 GO:0016746
Tpr5g2313 547 MobiDBLite consensus disorder prediction 226 241 - -
Tpr5g2313 547 Gene3D - 113 219 - -
Tpr5g2313 547 ProSiteProfiles Biotinyl/lipoyl domain profile. 118 194 IPR000089 -
Tpr5g2313 547 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 316 547 IPR001078 GO:0016746
Tpr5g2313 547 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 120 547 IPR006257 GO:0004742|GO:0006090|GO:0045254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2313 Tpr-Chr5 44319058 44327064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2313 2 547 Acyl Lipid Metabolism Gene Families AT1G54220 69.217 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2313 K00627 - gmx:100778218 832.787