Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2261 ATGGCGGAAAACGTAATCGGTTCACCACCTTCAACAATGGAAAACCCCTCTTCTTCAAACCCTACAATTCCAACACCTTCACCAATTTCCCAACAACAACAACAATCTCCTTCAATTCACATGTCATCTTCATCACCGTCTCTTTCTCAAGATCAACAACAACAACATTCACAGTTACATAGTATCAATAACATTAACCCTAACCCTAACCCTAATTCTAATGTCTCCAATTTTCAACTTCAACAATCACTTCAACGTTCTCCTTCTATTTCTCGCCTTAATCAAATTCAACCTCAGCAGCAGCAGCAGCAGCAACAGCAGCAAGTTGTGAGGCAGCAACTTTATGGTGGGCAAATGAATTTTGGTGGATCAGCTGCTGTTTCTGCTCAGCAACAGCAATTAAGCGGCGCTGGTGGTGTTGGTATCGGTGGTAATGCTTCCAATTTGTCGCGATCAGCTTTAATCGGACAGAGTGGTCACTTCCCTATGTTGTCTGGTGCCGGAGCAGGGCAGTTTAACCTATTAGCCTCGCCGAGGCAGAAAAGTGGTTTGGTGCAATCATCGCAATTTTCTTCGGGTAATTCTGCTGGACAGTCACTACAAGGAATGCAACAAGCAATTGGGATGATGGGGTCGTCCAATCTAGCCTCTCAAATGAGAACTAATGGAGCTCTTTATGCTCAGCAGCAGCAGCTTCGAATGACTCCGGCCCAAATTAGACAGCAGCTCTCACAGCAGGCTTCACTTAATAATCAACAGGTTCAAGGTTTACCAAGGTCATCGTCCCTTGCTTTTATGAATTCTCAGTTGTCTGGGTTGTCTCAGAATGGGCAGCCTGCCATGATACATAATTCTTTAACACAGAATCAGTGGCTCAAGCAAATGCCAGCAATGTCTGGCCCTGCCTCTCCGTTGCGTCTTCAACAACATCAGAGGCAGCAGCAGCTGGCTTCATCTGGTCAACTGCAACAAAACTCTATGACCCTAAACCAACAGCAATTAGCCCAATTGTTGCAGCAGAAGTCCATGGGGCAAGCTCAGCTTCAGCAGCAGCAGCCATCCTCTCAGCAGCAGCAGCAGCAACAACAACAACTATTACAGCAGCAGCAACAGCAACAATCGCAACTACAAGCATCTGTTCATCAACAGCAACAACTGCAGTCTCCGAGGATGACAGGACCTACAGGTCAAAAGTCACTAAGTTTAACAGGATCGCAGCCAGATGCTACTGCATCTGGCACGACCACACCCGGCGGAAGTTCAAGTCAAGGAACCGAAGCAGCTACAAACCAAGTACTTGGAAAGAGAAAGATACAGGATTTAGTTGCACAGGTGGATCCACATGGTAAGCTGGACCCTGAAGTTATAGATCATCTTTTAGAGCTTGCCGATGACTTCATTGATTCTGTAACTACACATGGTTGCATTTTGGCAAAACATAGAAAATCATCAACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAGAAAAATTGGGATTTGACAGTTCCAGGATATTCAAGTGAAGAGAAGAAGTACCAGAGTAGACCTTTGTTCAATGACCTTCACAAGAGGCGACTAGATGCAGTTCGCACATTGATGGAATCTTCTAAACTCCCCGAATCAAGTATTAACAATTCTAAAGATATCAGTAGACAGGGACATCCTAACCCTGCAGCTTCCCATCACCTAATGAGACCCCTGAGTTCAGACCAGTTGGTTTCTCATTCAAGTACTTCTCAAATACTACAGCCGATGACGAGGTTTTAA 1770 0.4497 MAENVIGSPPSTMENPSSSNPTIPTPSPISQQQQQSPSIHMSSSSPSLSQDQQQQHSQLHSINNINPNPNPNSNVSNFQLQQSLQRSPSISRLNQIQPQQQQQQQQQQVVRQQLYGGQMNFGGSAAVSAQQQQLSGAGGVGIGGNASNLSRSALIGQSGHFPMLSGAGAGQFNLLASPRQKSGLVQSSQFSSGNSAGQSLQGMQQAIGMMGSSNLASQMRTNGALYAQQQQLRMTPAQIRQQLSQQASLNNQQVQGLPRSSSLAFMNSQLSGLSQNGQPAMIHNSLTQNQWLKQMPAMSGPASPLRLQQHQRQQQLASSGQLQQNSMTLNQQQLAQLLQQKSMGQAQLQQQQPSSQQQQQQQQQLLQQQQQQQSQLQASVHQQQQLQSPRMTGPTGQKSLSLTGSQPDATASGTTTPGGSSSQGTEAATNQVLGKRKIQDLVAQVDPHGKLDPEVIDHLLELADDFIDSVTTHGCILAKHRKSSTLESKDLLLHLEKNWDLTVPGYSSEEKKYQSRPLFNDLHKRRLDAVRTLMESSKLPESSINNSKDISRQGHPNPAASHHLMRPLSSDQLVSHSSTSQILQPMTRF* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2261 589 CDD TAF12 433 501 IPR003228 GO:0005669|GO:0006352
Tpr5g2261 589 MobiDBLite consensus disorder prediction 304 322 - -
Tpr5g2261 589 MobiDBLite consensus disorder prediction 82 104 - -
Tpr5g2261 589 Pfam Transcription initiation factor TFIID subunit A 434 501 IPR003228 GO:0005669|GO:0006352
Tpr5g2261 589 MobiDBLite consensus disorder prediction 297 322 - -
Tpr5g2261 589 MobiDBLite consensus disorder prediction 8 59 - -
Tpr5g2261 589 Gene3D Histone, subunit A 428 502 IPR009072 GO:0046982
Tpr5g2261 589 MobiDBLite consensus disorder prediction 536 554 - -
Tpr5g2261 589 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 12 364 - -
Tpr5g2261 589 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 360 588 - -
Tpr5g2261 589 MobiDBLite consensus disorder prediction 380 432 - -
Tpr5g2261 589 SUPERFAMILY Histone-fold 431 502 IPR009072 GO:0046982
Tpr5g2261 589 MobiDBLite consensus disorder prediction 570 589 - -
Tpr5g2261 589 MobiDBLite consensus disorder prediction 535 558 - -
Tpr5g2261 589 Coils Coil 359 386 - -
Tpr5g2261 589 MobiDBLite consensus disorder prediction 1 59 - -
Tpr5g2261 589 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 12 364 IPR037794 GO:0000124|GO:0005669|GO:0046695
Tpr5g2261 589 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 360 588 IPR037794 GO:0000124|GO:0005669|GO:0046695
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2261 Tpr-Chr5 43647800 43654965 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2261 K03126 - gmx:100783017 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2261 5 43647800 43654965 Tpr5g2261 5 43647800 43654965 ECH