Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2252 ATGAAAATTATTCACATACTTTTGCTTTTCACTCTTCTCTCATTCACTATATCTCATGCTTCCGTAAATGATTTTTGTGTAGCAGACTTGAAGGTTCCTGATACCCCTTCAGGGTATCACTGCAAACCCCTTGCAAACATTACATCGGACGATTTCGTCTTCCACGGCTTTGTAGCCGGAGACACCAAAAACTCTTTCAACGCTGCACTTACCTCTGCATTTGTCACCGATTTTCCAGGTCTTAACGGACTTGGAATATCTGCGGCGCGATTAGACATAGCCGAAGGAGGATCAATTCCAATGCATACTCATCCTGGGGCTACCGAATTATTAATAATAGTTCAAGGTGAAATAACTGCTGGATTTTTGACACCTACCGCGGTTTATTCTAAGACGTTGAAACCGGGTGATATTATGGTTTTTCCACAAGGGATGTTGCATTTTCAAGTTAATACTGGTAAGGGACAAGCTACTGGATTTCTTGCTTTTAGTAGTGCAAATCCTGGTGCTCAATTACTTGATCTTCTTTTGTTTTCCAATAATTTGCCTTCTGAATTAGTGGCACAAACTACTTTCCTTGATCTCGCACAAGTGAAGAAGCTAAAGGCTCGTTTTGGTGGAAGAGGGTAG 630 0.4127 MKIIHILLLFTLLSFTISHASVNDFCVADLKVPDTPSGYHCKPLANITSDDFVFHGFVAGDTKNSFNAALTSAFVTDFPGLNGLGISAARLDIAEGGSIPMHTHPGATELLIIVQGEITAGFLTPTAVYSKTLKPGDIMVFPQGMLHFQVNTGKGQATGFLAFSSANPGAQLLDLLLFSNNLPSELVAQTTFLDLAQVKKLKARFGGRG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2252 209 Gene3D Jelly Rolls 19 208 IPR014710 -
Tpr5g2252 209 SMART Cupin_1_3 55 199 IPR006045 -
Tpr5g2252 209 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Tpr5g2252 209 Pfam Cupin 61 198 IPR006045 -
Tpr5g2252 209 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Tpr5g2252 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Tpr5g2252 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Tpr5g2252 209 PANTHER GERMIN-LIKE PROTEIN 9 205 - -
Tpr5g2252 209 CDD cupin_OxOx 18 205 - -
Tpr5g2252 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 205 - -
Tpr5g2252 209 SUPERFAMILY RmlC-like cupins 24 206 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2252 Tpr-Chr5 43537177 43538073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2252 3 207 Miscellaneous Gene Families AT5G20630 57.488 1.57e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2252 - - gmx:100783206 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2252 5 43537177 43538073 Tpr5g2252 5 43537177 43538073 ECH