Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2250 ATGAAAATTATTCACATACTTTTCCTTTTCACTCTTCTCTCTTCCACTATTTCTCATGCTTCTTATATCCATGATTTTTGTGTAGGAGATATAATGCATCCAGAAACCCCAACAGGCTATCACTGCATGCCCCTTGAAAACATCACATCAGACGATTTCGTCTTTCACGGTTTTGTAGCCGGAAACACGAACAACTCTTTCAACGCCGCACTTACATCCGCATTTGTTACTGATTTTCCAGGTCTTAACGCACTTGGAATCTCGGCAGCACGATTAGACATAGCCGAAGGTGGAGCAATTCCAGTGCATACTCATCCTAGTGCTACCGAATTATTGATAATGGTTCAAGGTGAAATAACCGCTGGATTTTTTACAACTAGTACGGTTTATTCTAAGACGTTGAAACCGGGTGATCTTATGGTTTTTCCACAAGGATTGTTGCATTTTCAAGTTAATTCTGGTAAGGGAAAAGCTACTGCTTTTCTTACTTTTAGCAGTTCAAATCCTGGTGCTCAATTAATTGATCTTCTTTTGTTTTCCAATAATTTGCCTTCTGAATTAGTGGCACAAACTACTTTCCTTGATCTCGCACAAGTGAAGAAGCTAAAGGCTCGTTTTGGTGGGAGAGGGTAG 633 0.3997 MKIIHILFLFTLLSSTISHASYIHDFCVGDIMHPETPTGYHCMPLENITSDDFVFHGFVAGNTNNSFNAALTSAFVTDFPGLNALGISAARLDIAEGGAIPVHTHPSATELLIMVQGEITAGFFTTSTVYSKTLKPGDLMVFPQGLLHFQVNSGKGKATAFLTFSSSNPGAQLIDLLLFSNNLPSELVAQTTFLDLAQVKKLKARFGGRG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2250 210 SUPERFAMILY RmlC-like cupins 20 207 IPR011051 -
Tpr5g2250 210 Pfam Cupin 59 199 IPR006045 -
Tpr5g2250 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 206 - -
Tpr5g2250 210 ProSitePatterns Germin family signature. 98 111 IPR019780 GO:0030145
Tpr5g2250 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 7 206 - -
Tpr5g2250 210 SMART Cupin_1_3 56 200 IPR006045 -
Tpr5g2250 210 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Tpr5g2250 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Tpr5g2250 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Tpr5g2250 210 CDD cupin_OxOx 25 206 - -
Tpr5g2250 210 Gene3D Jelly Rolls 18 209 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2250 Tpr-Chr5 43524197 43525102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2250 3 208 Miscellaneous Gene Families AT5G20630 55.769 2.15e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2250 - - gmx:100527498 314.694