Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2239 ATGAAAATGATTCAAATTATTCTTTTCATTTTTGCTCTTATCTCATATACCTCAAATGCTACTTCATCTGCCAAAGATTTTTGTGTAGCAAACTTATTGCTTCCCACCACCCCATCAGGCTTTCCATGCAAACCACCATCACTTGTAACAGCAAACGATTTTTCGTTCACTGGCTTAGTAGCTGGAAACACAGAAAACCGTTTTCGTCTCGGTGTAACAACTGCATCGGTCAATAATTTACCAGGTCTCAACGGACTTGGTATTTCCGCGGCAAGAATAGATGTTGGTTTTAATGGAACTGTACCAATGCATCTTCATCCTGATGCTAGTGAAATATCAATCATGGTTGAAGGTCAAATGATTGTTGGATTTATCACACCAACAAATCTTTTTGTGAAAACTGTTAATGCTGGTGATGTTTTTGTTTTTCCACAAGGACTGTTACATTTTCAAGTTAACTCTGGTTCTGGAACTGCTGTTTCTTTTTCTGCTTTTACTAGCCCAGATCCTAGCATGCAAGTACTTGATGAATTATTATTTGCCAACAGCTTACAAACTTCCATACTTCAAAAGGTTACTTTTCTTGATTTTGAACAAATTAAGAAGCTTAAGGCTGTCTTTGGTGGAACTGGCTAG 636 0.3742 MKMIQIILFIFALISYTSNATSSAKDFCVANLLLPTTPSGFPCKPPSLVTANDFSFTGLVAGNTENRFRLGVTTASVNNLPGLNGLGISAARIDVGFNGTVPMHLHPDASEISIMVEGQMIVGFITPTNLFVKTVNAGDVFVFPQGLLHFQVNSGSGTAVSFSAFTSPDPSMQVLDELLFANSLQTSILQKVTFLDFEQIKKLKAVFGGTG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2239 211 ProSitePatterns Germin family signature. 99 112 IPR019780 GO:0030145
Tpr5g2239 211 Gene3D Jelly Rolls 21 211 IPR014710 -
Tpr5g2239 211 SUPERFAMILY RmlC-like cupins 24 204 IPR011051 -
Tpr5g2239 211 SMART Cupin_1_3 57 201 IPR006045 -
Tpr5g2239 211 CDD cupin_OxOx 26 207 - -
Tpr5g2239 211 PRINTS Germin signature 104 124 IPR001929 GO:0030145
Tpr5g2239 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Tpr5g2239 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Tpr5g2239 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 8 207 - -
Tpr5g2239 211 Pfam Cupin 72 200 IPR006045 -
Tpr5g2239 211 PANTHER GERMIN-LIKE PROTEIN 8-13 8 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2239 Tpr-Chr5 43409738 43410487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2239 1 210 Miscellaneous Gene Families AT5G20630 50.472 1.54e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2239 - - cam:101508818 266.159