Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2238 ATGAAGATGATTCACATTATTCTTTACTTTCTTGCTCTTCTCTCATATACCTCTCATGCTACTACTACTTCTGTCAATGATTTCTGTGTAGCAAATTTATTGCTTCCAAACACTCCTTCAGGCTATCCATGCAAACCACAATCACTTGTAACAGAGAATGATTTTGTGTTCTCTAAACTTGGACCTGGAGTCCTAATACAGCCTTTTAATGCAGGAACAACAACTGTATCGGTCAAGAATTTACCGGGTCTCAATGGACTCGGTATCTCTGCAGGAAGAGTGGTTATTGGTATAAACGGAACTATACCAATGCACACTCATCCTGATGCAACTGAATTACTAATCGTTTCTCAAGGTCAAATTACTGCTGGATTTATCACACCTACAAAACTTATTGTGAAAAATCTTAATCCTGGTGATGTTTTTGTTTTTCCACAAGGACTATTGCATTTTCAAGTTAACTCTGGTGTTGGAAATGCTGTTGCTTTTGTTGCTTACAGTAACTCAGATCCTAACATACATTTACTTGATATTTTGTTATTTGGTAACAACTTATCAACTCCCACACTTGAAAAGACTACTCTGCTTGATGCAGCACAAATTAAGAAGCTTAAGGCACAGCTTGGTGGCAGTGGCTAG 639 0.3772 MKMIHIILYFLALLSYTSHATTTSVNDFCVANLLLPNTPSGYPCKPQSLVTENDFVFSKLGPGVLIQPFNAGTTTVSVKNLPGLNGLGISAGRVVIGINGTIPMHTHPDATELLIVSQGQITAGFITPTKLIVKNLNPGDVFVFPQGLLHFQVNSGVGNAVAFVAYSNSDPNIHLLDILLFGNNLSTPTLEKTTLLDAAQIKKLKAQLGGSG* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2238 212 SMART Cupin_1_3 55 202 IPR006045 -
Tpr5g2238 212 Pfam Cupin 65 200 IPR006045 -
Tpr5g2238 212 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 11 208 - -
Tpr5g2238 212 CDD cupin_OxOx 25 208 - -
Tpr5g2238 212 PANTHER GERMIN-LIKE PROTEIN 8-13 11 208 - -
Tpr5g2238 212 SUPERFAMILY RmlC-like cupins 26 209 IPR011051 -
Tpr5g2238 212 ProSitePatterns Germin family signature. 100 113 IPR019780 GO:0030145
Tpr5g2238 212 Gene3D Jelly Rolls 22 212 IPR014710 -
Tpr5g2238 212 PRINTS Germin signature 105 125 IPR001929 GO:0030145
Tpr5g2238 212 PRINTS Germin signature 134 154 IPR001929 GO:0030145
Tpr5g2238 212 PRINTS Germin signature 167 182 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2238 Tpr-Chr5 43391688 43392468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2238 1 211 Miscellaneous Gene Families AT5G20630 48.826 5.90e-60 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2238 - - cam:101508818 273.478