Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2047 ATGGGTGTTTTTGCTTTTGAAGATGATTTCGTTTCAACTGTTGCTCCACCTAAACTATACAAAGCTCTTGCAAAAGATGCCGATGAAATCGTCCCAAAGGTGATTCCGGTTATCCAAGGTGTTGAAATTGTTGAAGGAAATGGTGGACCTGGAACCATCAAGAAACTAACCGCTGTTGAAGATGGCAAAAGCAGCTTTATTCTACACAAAGTAGGAGCAGTGGATGAGGCAAACTTGGGATACAACTACAGTTTAGTTGGAGGAACAGGGTTAGACGAAAGCTTAGAGAAAGTTGAATTTGAGACAAGTGTTGTGGCTGGTTCTGATGGTGGATCCATTGTTAAGATTTCAGTGAAATACCACACTAAAGGTGATGCAGCTTTATCTGATGCAGTTCGTGAGGAAACTAAGGGCAAAGGAACTGGTCTTCTTAAGGCTATTGAGGGTTTTGTTTTGGCTAATCCTGATTATTGA 474 0.4114 MGVFAFEDDFVSTVAPPKLYKALAKDADEIVPKVIPVIQGVEIVEGNGGPGTIKKLTAVEDGKSSFILHKVGAVDEANLGYNYSLVGGTGLDESLEKVEFETSVVAGSDGGSIVKISVKYHTKGDAALSDAVREETKGKGTGLLKAIEGFVLANPDY* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2047 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g2047 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g2047 157 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g2047 157 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g2047 157 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g2047 157 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g2047 157 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g2047 157 Gene3D - 2 157 IPR023393 -
Tpr5g2047 157 PANTHER ABA-RESPONSIVE PROTEIN 1 157 - -
Tpr5g2047 157 CDD Bet_v1-like 6 148 - -
Tpr5g2047 157 PANTHER - 1 157 - -
Tpr5g2047 157 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g2047 157 Pfam Pathogenesis-related protein Bet v 1 family 1 153 IPR000916 GO:0006952
Tpr5g2047 157 SUPERFAMILY Bet v1-like 2 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2047 Tpr-Chr5 40878738 40880222 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2047 - - gmx:100500525 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2047 5 40878738 40880222 Tpr5g2047 5 40878738 40880222 ECH