Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1535 ATGTCTTTCACTGCAACAAAATTCTCACACTCTCTTCTTGCTGTTCCTGTCAATTCTTCAAGTCCTAGATCCAATGATAAACCACTTTCTTTCTCTTCTGATCTCTTCAAACACAACCCTTCTTCCTCTTTTCTTGGATCCACTCAAAAGCTTCTTCGTTTCAATGCTATCAATAAGCCTTTTCTTCATCGCCGTTCATCATCACCTTCTGCTGTTCTTCTTCAACAAACCTCCAATTTGCTTATTACTAAAGAAGAAGGGTTAGTGCTTTATGAAGACATGGTTTTAGGGAGATCCTTTGAAGACAAATGCGCTGAGATGTATTATAGAGGTAAAATGTTTGGCTTTGTTCACTTGTACAATGGCCAAGAAGCTGTGTCAACTGGATTCATAAAGTATTTGAGGCAAGAAGATTGCATAGTGAGCACATACAGAGACCATGTTCATGCATTGAGCAAAGGGGTCCCTTCTCGAGCTGTCATGAGCGAACTATTTGGAAAGGCGACTGGATGCTGCCGAGGTCAAGGTGGTTCAATGCATATGTTCTCAAAAGAACACAACGTGCTTGGTGGTTTTGCATTCATCGGTGAAGGAATTCCAGTAGCAACCGGTGCAGCATTTTCCATGAAGTACAAAAGAGAGGTGTTGAATCAGGCAGATTCTGATAATGTTACGTTGGCATTTTTCGGAGACGGAACTTGTAATAACGGTCAGTTCTTTGAGTGCTTGAACATGGCAGCTTTGTGGAAATTGCCAATTGTGTTTGTCGTGGAAAATAATTTGTGGGCCATTGGGATGTCGCATATCAGGGCAACTTCAGATCCTCAGATATGGAAAAAGGGTCCAGCATTTGGAATGCCGGGCGTTCACGTTGATGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCGAAGGAAGCAATTGACAGGGCTAGAAGAGGAGAGGGACCAACTTTAGTGGAATGTGAGACTTACAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTAACCCTGCTGAGAAGGAACACTATGCTGGTAGGGATCCAATCACTGCATTGAAGAAATACCTTTTCGAGAACAAATTAGCCACTGAACAAGAATTGAAGACAATAGACAAGAAAATTGATGAGATCCTTGAGGACGCTGTTGAATTTGCCGAAAAGAGTCCTCAACCCCCTCGCAGCCAGCTTCTCGAGAATGTCTTTGCTGATCCGAAAGGTTTTGGAATCGGACCGGATGGAAGGTACAGATGCGAGGATCCAAAGTTTACAGAAGGCACTGCTCATGTCTAA 1299 0.4319 MSFTATKFSHSLLAVPVNSSSPRSNDKPLSFSSDLFKHNPSSSFLGSTQKLLRFNAINKPFLHRRSSSPSAVLLQQTSNLLITKEEGLVLYEDMVLGRSFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKYLRQEDCIVSTYRDHVHALSKGVPSRAVMSELFGKATGCCRGQGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFSMKYKREVLNQADSDNVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHIRATSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIDRARRGEGPTLVECETYRFRGHSLADPDELRNPAEKEHYAGRDPITALKKYLFENKLATEQELKTIDKKIDEILEDAVEFAEKSPQPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1535 432 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA 13 432 - -
Tpr5g1535 432 Gene3D - 41 413 - -
Tpr5g1535 432 CDD TPP_E1_PDC_ADC_BCADC 90 388 - -
Tpr5g1535 432 Pfam Dehydrogenase E1 component 93 394 IPR001017 GO:0016624
Tpr5g1535 432 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 78 407 IPR029061 -
Tpr5g1535 432 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 85 405 IPR017597 GO:0004739|GO:0006086|GO:0043231
Tpr5g1535 432 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 13 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1535 Tpr-Chr5 29288235 29292806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1535 40 432 Acyl Lipid Metabolism Gene Families AT1G01090 81.454 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1535 K00161 - gmx:100811207 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1535 5 29288235 29292806 Tpr5g1535 5 29288235 29292806 ECH