Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1534 ATGGAACTCGACCTCCGCTCATTCCTTCCCGACGACACCGATTCCTCCGATCTCCACGTCACTCATCACCGAACCGTCGATGAAATTCTCAACGACTGTGATACTTCCTCATCTTCATCATCACCTTCTCCTCCTTCTTCTCCTCATAACAACAATAACAATAAACCCATTCAATTTCCTCAACCCGTACCCGTTTATCTTTCTCGGGTCAAACCCGATAAACCTCCACGCCCATTCTCTTCCTTATTTGGTCGTGTTACACCGAATGCTAAACCCGGTGCTGCTCTTGCTGCTGCTGCAGCTGCTTCCAGATCTGTTCCGACTCCACATGCGGCGGCGATAATTTCCAGGAGGAGAAGTTATAATTTGGCTAGAACTGAATCGGATTGTTCTGATGTTGATTCTAAAGGTAGTGAATTGGGGGAGAAAATTGATGATTCTGTTGATAGGAAAATTGAGAGGAGTAAGAGTGTTGATGATGGTGAAATTGGTGAAATTGCAGCAATTGAAGTGAATGAGAATGATAATGATAATGGTGTTGATGTTCAGGTGAAGAATGATTGTTCTGTTGTGAGTGAAGTGAAGAGTGATTTAGATGAGTGTTTAGTTTCTGCTTCCTTGAATGATGTTGAAAATGGTCATGATCACGATCACGATAAGGGTTTGAATTCTACACCTTTTGATGTTGTTGATGATGGTAATGATAATGGTTTTGGTGAAAAAACTAGTCTTGATTATGTTAATGATGATAAGGGTGTTAATGAAACAGAAGAAGAAATTGTGAATGGTGTTGGTGTTAGTGGTGGTTTTGTTGAAGGTATTGGGAATGAAGTGAATGATGATGAAGGCGGCGGTGCCGATGATGGTGGTGGTTATGATGATGTTGATGATGGTAGTTCAATTGTAGATGTTTTTGAATTAGTAGAGAATACACTTGAGGAACTGGAAAGTGTAAGTGTTACGAAGAAAAAATTAGAGTCTTCAAAGAAGCCGATTGATTTAGCTGAGGAATTGGAGAAGAAGAATGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCAGCCGCGCAACCGATGAGGCTTGAGGGTGTTCGGAGAGGGTCGATTCAATTGGGATATTTTGATGTTGATGCTGATAATGCTATCACAAGGACCATTTCATCGCAAACATTTAGGCGTGAGCATGGTTCTGCTAAAGTTTTGGTGGTTCATGCTAATTACATCGCAGTTGGAATGACAAAAGGGCTCATTGTTGTAGTTCCCAGTAAATATTCCATTCATCATGTGGATAATACAGATGGAAAGATGTTGATGCTTGGTATACAAGGTGATCGATCACATGCTCCAGTAACGTCCATGTCTTTCAATCAGCAAGGAGATCTTCTTTTAGCTGGTTATGGTGATGGTCATGTTACACTCTGGGATGTACAGAAAGGGGTAGTGGTAAAAGTTATCAGTGGAGAGCATACGGCACCGGTGGTACATGCCTTTTTTCTAGGACAAGATGCCCAGAATACTCGTCAATTTAAAGCAGTTACAGGTGATTGTAAGGGTCTGGTTGTCTTACATCATATCTCAGTGGTTGTTTTGATTAATAGGTTCAAAATTCAAACTCAGTGTCTTCTTGATGGGAAAAATACGGGCTTGGTACTATCTGCTTCGCCACTCCTTTCCGATGAATTCGATGGAAGTGCCTCATCTTATTCCCAGGGAAACGCTACAGTCTCAGCCAGCAGTATAAGTAGCATGGTCGGAGGTGTAGTTGGAGGAGATGCAGGTTGGAAACTCTTCAATGAAGGCTCTTCTCTGGTTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTCAGTCCCAAATTGGAAGTCTATGCTAACCTCTCTAGGCCAAATGGAATTCGAGAGGGTTCTATGCCATATACTGCATGGAAATACATGGCACAAGCATCTAGTTCTACTGAAAATATGTCTGCAGAAGCTGTTGAAAGAGTTTCATTGCTCGCAATAGCTTGGGAACGGAAAGTTCAGGTTGCAAGGTTGGTCAAATCAGAATTAAAAGTATATGGAGAATGGTCTCTTGACAGTGCTGCTATAGGTCTGGCATGGTTGGATGATCAGATGCTGGTAATTCTCACTTCAACTGGACAACTGAATTTATTTGCCAAGGATGGAACTGTGATTCACCAAACAAATTTTGGTGTAGATGGTATTGGAGGAGATGAACTACTTTCATATCATACTCACTTTGTTAACATATATGGGAACCCTGAGAAAGGTTATCATAACTCCATTGCTGTAAGAGGAACTTCTATTTATATACTTGGTCCAACACATCTTATTGTTTCTCGTCTTCTCCCTTGGAAAGAACGTATCTTGGTTTTACGGAAAGCAGGTGATTGGATGGGGGCCTTAAACATGGCAATGACTCTTTATGATGGCCATGCTCATGGGGTTGTTGATCTACCAAGAACCTTGGACGCAATACATGAAGCTATAATGCCCTACTTGGAGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCGGTGGCTTTTTGCAACCAAATTGGAAAACCTGATCAACCCTATGATTCAAATAATAGAAGCAATTCAGTGCATTCTGAAATAAAGGAGCAATACACCCGTGTTGGTGGAGTTGCTGTTGAATTTTGTTGTCATATCAAACGGACAGACATCCTTTTTGATAAAATTTTCTCCAAGTTCATTGATGTTCATGTTCAACAGAGAGAAACATTTTTGGAGCTTTTGGAGCCGTATATTTTGAAGGATATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGCACGAAAGGGTGGCTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATTTCATCCTTGGATTTTAATCAGGTGGTCAGATTATGCCGGGAACATGGACTATATAGTGCCCTGGTGTATCTCTTCAATAAAGGCTTAGATGATTTTAGAGCACCTCTTGAGGAGCTCTTCGCAGTCCTACAAAATAGCCAGAAGGAAAATGCTATTGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTGCCTTTCCACCAGGCCATGGAACTATTCCTCCTACGCGGTTGCCATCTCTTAGAAAAGAACTAGTAGAGTTTTTGTTAGAGGACTCCAGTGCTATGAAATCACGGACAGTTTCAGGTTCAATGTCGAAACAGCCATACGTGAATCTATATCTCCTCTTAGAGTTAGACACTGAAGCTACATTAGATGTCCTCCGATGTGCTTTCATGGAAGATAAATTATCAAATTCCAGCTCATCTTCACCGGAGTCAGCTGATAGACCTATCGAAGAAGCAAAAGAAGAAAATAATGTTACTGAAACTGAAAATGTTTTGGTTCAGAATACGGTGGATGCTCTAATTCAAATTACTGATATGAATGTTGTTCCATCAGATACAACCTCTAGTAATGGGGATGACGGATTATCAAAAGTGGGGACTTCGAAAGACAAAGGCTGTGTGTTTGAGTTCATTGCATATTATGTTGCTCGCCAAAGAGCTAAAGTTTCAAAGGGCATGCTTTGTCGAATATTGGAATATTTGACATTAGATAATCACATTTCAACTAATGTTTCTTCTCACAGTTCAACTCCAAAAAATAGAGAGAAGCAAGTGCTTGCACTTCTGGAAGTAGTTCCCGAGTCCGACTGGGATGTGCCATTTCTTCTAGACCTATGTGAGAGAGCCAAGTATCATCAGGTTTGTGGATTGATTCATTCCATCAGACATGAGTATGTGGCTGCATTGGATAGCTATATGAAGGATGTAGATGAGCCTGTTCATGCCTTCTCCTTTATCAACAAAGCATTCTCACAGTTTATTGGTAATGACCGTGCTGCTATTCGATCAGCAGTCCTATCTCGAATTCCTGAATTGGTTGAACTAAGCAGGGAAGGTGCATTCCATATGGTTACCAGACATTTTAGTGATGAAAGTTCCCATATCATCACTAAACTTCATTCTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAGCTACACTTATTTGGCACCCTAGACTTGTCTGGTTTGACGAAGGATGTTATTACGAATCCCCCTAATGTAAAACAGGTTAAGGATCCGCCACAAGGAATTCATGATTACTTAGAAAATATATCCGATTTCCCCAAGCACATGCGTGAAAATCCAAGTCATGTGCCTGATGATCTTATTGAGCTTTACCTAGAGCTATTATGTCAGTATGAACGGGGTTCAGTTCTGAAGTTTCTAGAAATGTTCGATAGCTATCGTGTGGAACATTGTTTACGCCTGTGCCAAGAATATGGCATCATAGATGCTGCTGCTTTCTTATTGGAAAGAGTTGGTGATGTTGGTACTGCTCTTTCACTTACTCTTTCTGATCTGAATGATAAATTTGTTGAGCTCGATACTGCTGTGGAGGCTGTAGTCTTAAATCATCCCAAGCTTGATTCTTCCAGTACAGAAGTATTCAACACTGTTTTAAGAACAAAAGAGGTGAATGGCATGTACGATTTATTGCATGCCTGTATCGGTCTGTGTCAGCGGAACACTCCTCGTCTAAATCCTGAGGAGTCAGAGTCACACTGGTTTAAATTACTGGACTCGTTCTGTGACCCATTGATGGATTCATCTGTTGAAGAGAGAGCATATGAACGAAAAAATTATTTTGGTGTGCTGGCTGAATCAGAAGATTCACAACTGGATAAAGACACCTATAAAACCAGTTGGAAGATTTCAAAGTCCCGAAATGGTGATATCTTGAGAAAATTGCTATCACAGTTCATTAAAGACATTGTTGAGGGAATGATAGGTTTTGTTCACCTTCCGTCTATCATGTCCAAACTCTTGTCTGATAATGGTAGTCAAGAATTTGGATATTTTAAACTTACGATATTAGGGATGCTGGCAACATATGGTTTTGAAAGAAGAATTCTGGATGCTGCCAAATCCTTGATAGAGGATGATACATTCTATACCATGAGTTTACTCAAGAAAGGGGCGTCTCATGGATTTGCTCCCAGGACTTCAGTGTGCTGTATTTGTAACGCCCTGCTTACAAAAAACTCAGTTACCACCGGAATTCGAATTTTCAACTGTGGCCATGCAATTCATCTCCAGTGTGAAGTCTCTGAAGTCGAGTCGTCAAGCAAAGGATTTTCATCTGGATGCCCTGTATGCATGCCTAACCAAAAACCCCAAAAGTCTAGAAACAAATCAACCACTACAGATAATGGTTTGGTCAATAGATTCTCATCAAGACGCCAACACCCGCATGGAAGTACAATTCATCACCATGACAATGATTTATCAGAGAATATGTATGCAGGACAGCAACAGATATCACGGTTTGAGATCTTGAGCAGCTTGCAGAAAAATCCAAGATTTATGCAATTAGAAAACTTGCCTCCTTTGAGACTTGCCCCGCCTGCTGTGTACCATGAAAAGGTAAGTAAAGTTGCACACTATCAGACTGGAGAAAGTAGCAACAGTTCTGCAGTTATAGATAAACATAGTCGTCAAAAACAAAACCGGGAGCTGAGAGTTAGAGGTTCATCGATTCGTTTTCCTCTAAAATCAAGTATATTTGGCAAGGACAAGACGAATAAGCGGTGA 5703 0.408 MELDLRSFLPDDTDSSDLHVTHHRTVDEILNDCDTSSSSSSPSPPSSPHNNNNNKPIQFPQPVPVYLSRVKPDKPPRPFSSLFGRVTPNAKPGAALAAAAAASRSVPTPHAAAIISRRRSYNLARTESDCSDVDSKGSELGEKIDDSVDRKIERSKSVDDGEIGEIAAIEVNENDNDNGVDVQVKNDCSVVSEVKSDLDECLVSASLNDVENGHDHDHDKGLNSTPFDVVDDGNDNGFGEKTSLDYVNDDKGVNETEEEIVNGVGVSGGFVEGIGNEVNDDEGGGADDGGGYDDVDDGSSIVDVFELVENTLEELESVSVTKKKLESSKKPIDLAEELEKKNASTGLHLEEGAAAQPMRLEGVRRGSIQLGYFDVDADNAITRTISSQTFRREHGSAKVLVVHANYIAVGMTKGLIVVVPSKYSIHHVDNTDGKMLMLGIQGDRSHAPVTSMSFNQQGDLLLAGYGDGHVTLWDVQKGVVVKVISGEHTAPVVHAFFLGQDAQNTRQFKAVTGDCKGLVVLHHISVVVLINRFKIQTQCLLDGKNTGLVLSASPLLSDEFDGSASSYSQGNATVSASSISSMVGGVVGGDAGWKLFNEGSSLVEEGVVVFVTHQTALVVRLSPKLEVYANLSRPNGIREGSMPYTAWKYMAQASSSTENMSAEAVERVSLLAIAWERKVQVARLVKSELKVYGEWSLDSAAIGLAWLDDQMLVILTSTGQLNLFAKDGTVIHQTNFGVDGIGGDELLSYHTHFVNIYGNPEKGYHNSIAVRGTSIYILGPTHLIVSRLLPWKERILVLRKAGDWMGALNMAMTLYDGHAHGVVDLPRTLDAIHEAIMPYLEELLTSYVDEVFSYISVAFCNQIGKPDQPYDSNNRSNSVHSEIKEQYTRVGGVAVEFCCHIKRTDILFDKIFSKFIDVHVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYLFNKGLDDFRAPLEELFAVLQNSQKENAIALGYRMLVYLKYCFTGLAFPPGHGTIPPTRLPSLRKELVEFLLEDSSAMKSRTVSGSMSKQPYVNLYLLLELDTEATLDVLRCAFMEDKLSNSSSSSPESADRPIEEAKEENNVTETENVLVQNTVDALIQITDMNVVPSDTTSSNGDDGLSKVGTSKDKGCVFEFIAYYVARQRAKVSKGMLCRILEYLTLDNHISTNVSSHSSTPKNREKQVLALLEVVPESDWDVPFLLDLCERAKYHQVCGLIHSIRHEYVAALDSYMKDVDEPVHAFSFINKAFSQFIGNDRAAIRSAVLSRIPELVELSREGAFHMVTRHFSDESSHIITKLHSHPRSLFLYLKTLIELHLFGTLDLSGLTKDVITNPPNVKQVKDPPQGIHDYLENISDFPKHMRENPSHVPDDLIELYLELLCQYERGSVLKFLEMFDSYRVEHCLRLCQEYGIIDAAAFLLERVGDVGTALSLTLSDLNDKFVELDTAVEAVVLNHPKLDSSSTEVFNTVLRTKEVNGMYDLLHACIGLCQRNTPRLNPEESESHWFKLLDSFCDPLMDSSVEERAYERKNYFGVLAESEDSQLDKDTYKTSWKISKSRNGDILRKLLSQFIKDIVEGMIGFVHLPSIMSKLLSDNGSQEFGYFKLTILGMLATYGFERRILDAAKSLIEDDTFYTMSLLKKGASHGFAPRTSVCCICNALLTKNSVTTGIRIFNCGHAIHLQCEVSEVESSSKGFSSGCPVCMPNQKPQKSRNKSTTTDNGLVNRFSSRRQHPHGSTIHHHDNDLSENMYAGQQQISRFEILSSLQKNPRFMQLENLPPLRLAPPAVYHEKVSKVAHYQTGESSNSSAVIDKHSRQKQNRELRVRGSSIRFPLKSSIFGKDKTNKR* 1901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1534 1900 SMART ring_2 1708 1756 IPR001841 -
Tpr5g1534 1900 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 483 IPR001680 GO:0005515
Tpr5g1534 1900 Gene3D - 362 512 IPR015943 GO:0005515
Tpr5g1534 1900 MobiDBLite consensus disorder prediction 32 61 - -
Tpr5g1534 1900 Pfam Golgi CORVET complex core vacuolar protein 8 925 1109 IPR025941 -
Tpr5g1534 1900 ProSiteProfiles Zinc finger RING-type profile. 1708 1756 IPR001841 -
Tpr5g1534 1900 PANTHER VACUOLAR PROTEIN SORTING VPS41 303 1828 IPR045111 GO:0006623
Tpr5g1534 1900 Coils Coil 1129 1149 - -
Tpr5g1534 1900 Pfam Region in Clathrin and VPS 1400 1503 IPR000547 GO:0006886|GO:0016192
Tpr5g1534 1900 PANTHER - 303 1828 - -
Tpr5g1534 1900 ProSitePatterns Trp-Asp (WD) repeats signature. 461 475 IPR019775 -
Tpr5g1534 1900 SUPERFAMILY WD40 repeat-like 388 720 IPR036322 GO:0005515
Tpr5g1534 1900 MobiDBLite consensus disorder prediction 32 59 - -
Tpr5g1534 1900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 442 478 - -
Tpr5g1534 1900 CDD RING-H2 1708 1757 - -
Tpr5g1534 1900 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1376 1529 IPR000547 GO:0006886|GO:0016192
Tpr5g1534 1900 MobiDBLite consensus disorder prediction 1116 1140 - -
Tpr5g1534 1900 MobiDBLite consensus disorder prediction 1853 1880 - -
Tpr5g1534 1900 SUPERFAMILY RING/U-box 1707 1762 - -
Tpr5g1534 1900 Pfam Anaphase-promoting complex subunit 4 WD40 domain 432 489 IPR024977 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1534 K20178 - gmx:100780869 2717.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1534 5 29274086 29286033 Tpr5g1534 5 29274086 29286033 ECH