Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1533 ATGGCAACAGTGACTGCTTCAAGTAACATAGTATCCAGAATTTCTCATATCAATATGTCAACTTTCTCATGCGAGTCTAAAACGGCGGCACCAATGAGACTTGGTTATATGAGGAAAGCTAATACTCATAATGGACTCAGAATTTTGAATTCATTGGATGAGCTGTTAAACAGAACCTCAATTAAAATGAAGGGAGTGCAATCAAGGAAGAAGGGTCTTCAGAGAAAGAGTGTTAGGCCTAAAGGTATTATAATTTGTGGCTTGAATTTGATCTTTGTTGGAACTGAGGTTGCTCCATGGAGCAAAACTGGTGGTTTAGGCGATGTTCTAGGAGGTCTTCCACCAGCATTAGCAGCTAATGGGCACAGAGTTATGACAATCGCACCGCGCTATGATCAATACAAAGATGCATGGGATACAAGTGTATCAATTGAGATAAAAGTAGGAGATAGAAAAGAAACAGTTCGCTTCTTCCATTGCTTTAAAAGAGGAGTTGATCGCGTGTTTGTAGATCACCCTATATTTCTTGAAAAGGTTTGGGGTAAAACTGGAACAAAAATCTATGGACCTGCGGCAGGAGATGATTACCAAGACAATCAATTGCGCTTTAGCCTCTTCTGTCAGGCAGCTCTTGAAGCAGCAAGAGTTCTGAATCTCGAGAGCAATAAATATTTTTCAGGACCATATGGTGAAGATGTCATTTTCGTCGCTAACGATTGGCACACCGCCCTTATCTCATGCTACTTGAAATCTATGTACCAATCAATAGGCCTCTTTAGGAATGCCAAAGTTGTTTTTTGTATACACAACATTGCTTACCAAGGAAGATTTTCATTCGCCGACTATTCACTTCTCAATCTCCCTGACCAATTTAAAAGCTCCTTTGACTTCCTTGATGGGCATGTTAAACCAGTTGTTGGAAGAAAAATCAATTGGATGAAAGCTGGAATATTGGAATCTCATTTGGTTTTAACTGTTAGTCCATATTATGCTCAAGAACTAGTGTCAGGCCCAGATAAAGGTGTCGAGTTGGACAACATTTTACGCCGAACTGGTGTTGCTGGAATCATAAATGGCATGGATGTTCAAGAGTGGAATCCAGCCACTGACAAATACATAACTGTCAAATATGATGATTCGACAGTATTGGAAGGAAAGGCTCTTCTGAAAGAAGCACTCCAGGCAGAAGTTGGTTTGCCGGTTGACAAAAATATTCCTCTCATTGCTTTCATTGGAAGGCTTGAAGAGCAAAAAGGTTCTGATATTCTTGTAGCAGCCATTCCTCAATTTATTAAGGAGAATGTTCAGATAGTAGCCCTAGGAACAGGAAAAAAAGAAATGGAAAAGCAACTTCAAGAACTTGAAATATCATACCCTGACAAGGCCAGAGGAGTTGCAAAATTCAATGTTCCCCTAGCTCACATGATAATTGCAGGAGCTGATTTTATATTGATTCCTAGTAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTACGGAACAGTACCTATTGTTGCCTCAACAGGTGGATTAGTGGACACAGTCAAAGAAGGTGTCACTGGATTTCAGATGGGTTCTTTCAATGTTGAATGTGATGCTGTGGATCCAGTTGATGTGGATGCTATAGCAAAGACTGTCACAAAGGCCCTTGCAGTCTATGGAACTCAAGCTTTTGCAGAAATCATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTTCTGCTAAGTTTGGGAGTTCCTGGAAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAATGGAAAATGTGGCAACTCCATGA 1845 0.4081 MATVTASSNIVSRISHINMSTFSCESKTAAPMRLGYMRKANTHNGLRILNSLDELLNRTSIKMKGVQSRKKGLQRKSVRPKGIIICGLNLIFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTSVSIEIKVGDRKETVRFFHCFKRGVDRVFVDHPIFLEKVWGKTGTKIYGPAAGDDYQDNQLRFSLFCQAALEAARVLNLESNKYFSGPYGEDVIFVANDWHTALISCYLKSMYQSIGLFRNAKVVFCIHNIAYQGRFSFADYSLLNLPDQFKSSFDFLDGHVKPVVGRKINWMKAGILESHLVLTVSPYYAQELVSGPDKGVELDNILRRTGVAGIINGMDVQEWNPATDKYITVKYDDSTVLEGKALLKEALQAEVGLPVDKNIPLIAFIGRLEEQKGSDILVAAIPQFIKENVQIVALGTGKKEMEKQLQELEISYPDKARGVAKFNVPLAHMIIAGADFILIPSRFEPCGLIQLQAMRYGTVPIVASTGGLVDTVKEGVTGFQMGSFNVECDAVDPVDVDAIAKTVTKALAVYGTQAFAEIIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAMENVATP* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1533 614 Gene3D Glycogen Phosphorylase B; 361 571 - -
Tpr5g1533 614 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 80 586 - -
Tpr5g1533 614 Pfam Glycosyl transferases group 1 402 527 IPR001296 GO:0016757
Tpr5g1533 614 Hamap Glycogen synthase [glgA]. 88 589 IPR011835 GO:0004373
Tpr5g1533 614 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 1 614 - -
Tpr5g1533 614 CDD GT5_Glycogen_synthase_DULL1-like 89 588 - -
Tpr5g1533 614 PANTHER GRANULE-BOUND STARCH SYNTHASE 1 614 - -
Tpr5g1533 614 Pfam Starch synthase catalytic domain 90 349 IPR013534 -
Tpr5g1533 614 Gene3D Glycogen Phosphorylase B; 90 580 - -
Tpr5g1533 614 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 89 587 IPR011835 GO:0004373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1533 Tpr-Chr5 29265172 29270697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1533 1 614 Glycosyltransferase AT1G32900 71.104 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1533 K13679 - gmx:100037476 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1533 5 29265172 29270697 Tpr5g1533 5 29265172 29270697 ECH