Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1488 ATGAACCAAGTGAAGCAAATTCATGGTTACACACTAAGAAATGGCATAGACAACACCAAAATCCTCATTGAGAAACTACTTGAAATCTCAAACCTACACTATGCCAAATTATTGTTACAACATTCTCAAAAACCAACTGTTTTTCTTTACAACAAACTCATTCAAGCTTATTCCTCAAAAAACCAACACCAATGTTTCACCCTTTACTCCCAAATGCTCCTTCATGGTCACTCACCAAATCAACACACTTTCAACTTCATTTTTTCTACATGTATATCAACTTCATCACTTACCATTGGCCAAATGATTCATACCCATTTCACCAAATCAGGTTTTCAACCTGATGTATTTGCTTCCACTGCTTTGCTTGATATGTATGCTAAATTGGGTGATTTGAAATGTGCATGCCGTGTGTTTGATGAAATGTCTGTGAGGGAGTTACCCACTTGGAATGCTATGATGGCGGGGTATATGAGGTTTGGTGATATGGAGAGTGCGTTGGAATTGTTTCGGTTGATGCCTTCGAGGAATGTGGTGTCGTGGACCACTATTGTATCAGGTTACTCACATAATAAGCAGTATGAAAAAGCTTTGGAGTTGTTTTTGAGGATGGAGAAGGAGAAAGATGTAATTCCTAATGACGTGACTTTGGCGAGTGTTTTGCCGGCTTGTGCGAATCTTGGTGCACTTGAGATTGGGCAGAGGGTTGAAGCGTATGCAAGGAAAAATGGGTTTTTTAGGAATTTGTTTGTAAGCAATGCTGTATTGGAGTTGTATGCAAAATGTGGTAAGATTGATGTTGCTTGGAAGGTGTTTGATGAGATAGGTATATTCAGAAACTTGTGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTTCATGGACAATGTCACAAGGCTATTGAGCTTTATGATCAAATGTTGAGAGAAGGAGCTTTGCCTGATGACGTGACATTCGTGGGGCTTCTCTTGGCATGCACACATGGTGGCATGGTTGAAAAAGGCAAGCATATCTTCCTGTCAATGACAAGAGACTTCAACATTATTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTCTTAGGCCGTGCCGGGAAACTAAAAGAAGCTTATGAGGTGCTACAAAGTATGCCAATGAAGCCAGACTCAGTAATATGGGGTGCTTTATTGGGTGCTTGCAGTTTCCATGGTAATGTTGAGCTGGCTGAGATAGCAGCGGAGTCTTTATTTACACTTGAGCCTTGGAATCCAGGAAATTACGTCATTCTTTCGAACATTTATGCATCAGCCTGCCAATGGGATGGAGTTGCAAAGCTCAGGAAGGTGATGAAGGGAAGCAAGATTACAAAGACAGCTGGACATAGCTTCATTGAAGAAGGAGGTCAATTGCATAAGTTTATTGTGGAGGATAGATCCCACTCAGAAAGTAGCGAAATTTTTGCGTTGCTAAATGGAGTTTATGAAATGATGAAGTTTAATAGAAATGAATATGAATGCCATTTGGATATTTTTCTTTGA 1521 0.4017 MNQVKQIHGYTLRNGIDNTKILIEKLLEISNLHYAKLLLQHSQKPTVFLYNKLIQAYSSKNQHQCFTLYSQMLLHGHSPNQHTFNFIFSTCISTSSLTIGQMIHTHFTKSGFQPDVFASTALLDMYAKLGDLKCACRVFDEMSVRELPTWNAMMAGYMRFGDMESALELFRLMPSRNVVSWTTIVSGYSHNKQYEKALELFLRMEKEKDVIPNDVTLASVLPACANLGALEIGQRVEAYARKNGFFRNLFVSNAVLELYAKCGKIDVAWKVFDEIGIFRNLCSWNSMIMGLAVHGQCHKAIELYDQMLREGALPDDVTFVGLLLACTHGGMVEKGKHIFLSMTRDFNIIPKLEHYGCMVDLLGRAGKLKEAYEVLQSMPMKPDSVIWGALLGACSFHGNVELAEIAAESLFTLEPWNPGNYVILSNIYASACQWDGVAKLRKVMKGSKITKTAGHSFIEEGGQLHKFIVEDRSHSESSEIFALLNGVYEMMKFNRNEYECHLDIFL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1488 506 Gene3D Tetratricopeptide repeat domain 23 146 IPR011990 GO:0005515
Tpr5g1488 506 Gene3D Tetratricopeptide repeat domain 294 480 IPR011990 GO:0005515
Tpr5g1488 506 Gene3D Tetratricopeptide repeat domain 147 244 IPR011990 GO:0005515
Tpr5g1488 506 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Tpr5g1488 506 TIGRFAM PPR: pentatricopeptide repeat domain 149 179 IPR002885 -
Tpr5g1488 506 TIGRFAM PPR: pentatricopeptide repeat domain 179 213 IPR002885 -
Tpr5g1488 506 TIGRFAM PPR: pentatricopeptide repeat domain 120 145 IPR002885 -
Tpr5g1488 506 TIGRFAM PPR: pentatricopeptide repeat domain 355 378 IPR002885 -
Tpr5g1488 506 PANTHER OS06G0125600 PROTEIN 2 459 - -
Tpr5g1488 506 Pfam Pentatricopeptide repeat domain 108 142 IPR002885 -
Tpr5g1488 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Tpr5g1488 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Tpr5g1488 506 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 459 - -
Tpr5g1488 506 Pfam E motif 397 459 IPR046848 -
Tpr5g1488 506 Pfam PPR repeat family 280 326 IPR002885 -
Tpr5g1488 506 Pfam PPR repeat family 176 225 IPR002885 -
Tpr5g1488 506 Pfam PPR repeat family 45 91 IPR002885 -
Tpr5g1488 506 Pfam PPR repeat 354 379 IPR002885 -
Tpr5g1488 506 Pfam PPR repeat 253 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1488 Tpr-Chr5 28249676 28253733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1488 5 492 Glycoside Hydrolase AT3G49170 32.797 2.00e-84 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1488 - - gmx:100790321 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1488 5 28249676 28253733 Tpr5g1488 5 28249676 28253733 ECH