Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1432 ATGACATTTTGCATTTTCTCTAAGCACCAAATCTTTATGTATAACCTATCACCTTTTCAACACCTTAATCCTTATTCTCATCAAAACCTTAAAACAAACATGTTACCTAGGAGCCTTTCACCACCCACTTCAATTTCTCTTCCAACATTAGATACCCAATTTTTCCCTCCTTCATTTTCATCACAAAAAAATTCTCCATTTTTTCAACCTTTTGATGAGTTGAACAAGTTAAGAACTTTGAATTCTGTCAAGGAATTACATGCCCAGATGATTAAAACCCCTAAAAATGAAAACTTTACTTCAATGGATGATACTATGATGAGATACTATTTGGAATTTGGTGATTTTGATTCAGCAATTAGGGTTTTCTTTGTGGGTTTTACAAGAAATTATATTTTATGGAATTCTTTTCTTGAGAAGTTTGAGAGTTTTGGAGGTGACCCATTTGAGATTTTGGTGGTTTTCAATGAATTGTATAGTAAAGGAGTTGAATTTGATAGCAAAGTTTTCACCTTTGTTTTGAAAATTTGCTTAGCTTTAAGGGTTTTGTGTGTTGGTTTGGAAGTTCATGCTTGTTTGATCAAAAAAGGGTTTCATTTTGATGTGCACTTGAAGTGTGCATTGATCAATTTCTATGAGAAGTGTTTGAGTATAGATAAGGCAAATCAAGTATTTCATGAGACTTCATATAAAGAAGATTTTTTGTGGAATACAATAGTTATGGCAAATTTGAGGAGTGAGAAGTGGAAGAATGCTTTAGAACTTTTCTGTAGCATGCAGAGAGTTTCTGCCAAAGCCAATGCCGGCACCATTGTCAAGATGTTGCAAGCTTGTGGAAAGTTGAGAGCTTTCAATGAAGGGAAACAGATTCATGGGTATGCTTTAAGATTTGGACTAGTTTCGAATACTTTAGTTTGCAATTCGATTATTAGTATGTACTCTAGAAACAGTAGATTTGAACTAGCTAGAGCGGTTTTTGATTCGATGGAGGATTGTAGTCGTAACTTATCGTCTTGGAACTCGATTATTTCGAGTTATGCGGTTGATGGTTGTTTGAGTGATTCATTGGATAATGTCATCAAAGAAATGGAGTATTCCGGTATTAAATCGGATATTATAACATGGAATTCGGTTTTGTTGGGTTATGTTCGTCAGGGATTATTTGAAAAGGTTCTCACCAGTTTTCGGAGTCTGCATAGTGCAGACTTCAAGCCGGATTCATGCTCGGTAACTAGTGCTCTACAAGCAGTTGCTGAATTAGGTTTATTTAAAATAGGGACAGAAATCCATGGTTACATGATGAGAACTAATCTTAACTATGATGTCTATGTTTGTACTTCATTGGTGGATATGTATGTTAAGAATCATTGCTTAGATAAGGCTCATGAAGTGTTCCGTCATGCAAAGAACAAAAACATTTACGCTTGGAATTCTTTGATATCAGGTTACGCCTTCGAGGGCCTGTTTGGTGATGCGGAAAAACTATTGAATCAGATGGAGGAGGAAGGGCTAAAACCTGATTTGGTGACATGGAATGGTTTGATTTTAGGTTATTCAATGCGAGGCCGTGTAGAGGAAGCTTTGACTGTGATCAATCGGATCAAGAGTTCCGGAATTACTCCGAATGTGGTGTCGTGGACTTCTTTGATATCAGGATGTTCTCAAAACGAAAAGTACATTGATGCCCTACAGATTTTCAGCCAAATGCAAGAAGAAAATGTAAAACCTAACGCGACAACGATTTGCAACTTACTTTGTGCTTGTGCAGGCCCGTCGCTGTTGAAGAAAGGTGAAGAGATACACTGCCTTAGTATGAAACTAGGGTTTGTGGATGATATATACGTTGCAACATCCCTAATTGACATGTATTGTAAAGCAGGGAAATTAAAAGTAGCATACAATGTTTTCATCAATGTTCAAAAGAAAACACGTCCATGTTGGAATTGTATGATGATGGGATATGCTATTCATGGTCATGGGGAAGAGGTAATAATTCTTTATGACGAGATGCGTGAAAGATGCATTAAACCTGACGCGATAACGTTCACTGCTCTTCTTTCGGGCTGCAAGAATTCAGGTTTAGTCGATGAAGGATGGAAGTATTTTGATAGTATGCAAGATTACAATATTGTTCCAACAATTGAGCACTACTGTTGCATGATAGACCTACTTGGAAAAGCTGGTTTTCTCGACGAAGCTTCGGATTTCATCGAAACTATGCCGATTAAGCCAGATGCAAGTATTTGGGGTGCTCTTCTTGCATCCTGCAGAATTCACAAAAACATTAAGCTAGCAGAGATCGCGGCAAGGAAGCTTTTTAAGTTGGAACCAAATAATTCTGCTAACTATGTTTTGATGATGAATTTATATTCAAGTTTAAACCGATGGGATGATGTGGAGCGCCTTAAATGCTCAATGACTGAGTTGGCGATAAGAAGTCCACCTGTTTGGAGCTGGACACAGGTTAATCAAAGTATTCACGTGTTCTCTACAGATGGGAAACCACATCCAGAAGAAGGGAAAATATATTTTGAGTTATATGGATTAATTTCCGAGATACGAAAGCTCGGTTATGTAGCTGATCTCAATTGTGTATGTAAGAACATTGATGACAATGAGAAAGAGAAGATTCTTATGAGTCACACTGAGAAGTTGGCAATGGTGTATGGAATGATGAAAATGAAAGGTGGATCACCAATTAGAGTTGTTAAGAACACAAGAATTTGTTGTGACTGTCATACAGTAGCAAAGTACATTTCTTCGGCTCGAAACTGTGAGATTTTACTTCGAGATGGTGGCCGTTTTCACCATTTTAAAAATGGAAAATGTTCTTGTAATGATCGTTGGTAA 2850 0.3709 MTFCIFSKHQIFMYNLSPFQHLNPYSHQNLKTNMLPRSLSPPTSISLPTLDTQFFPPSFSSQKNSPFFQPFDELNKLRTLNSVKELHAQMIKTPKNENFTSMDDTMMRYYLEFGDFDSAIRVFFVGFTRNYILWNSFLEKFESFGGDPFEILVVFNELYSKGVEFDSKVFTFVLKICLALRVLCVGLEVHACLIKKGFHFDVHLKCALINFYEKCLSIDKANQVFHETSYKEDFLWNTIVMANLRSEKWKNALELFCSMQRVSAKANAGTIVKMLQACGKLRAFNEGKQIHGYALRFGLVSNTLVCNSIISMYSRNSRFELARAVFDSMEDCSRNLSSWNSIISSYAVDGCLSDSLDNVIKEMEYSGIKSDIITWNSVLLGYVRQGLFEKVLTSFRSLHSADFKPDSCSVTSALQAVAELGLFKIGTEIHGYMMRTNLNYDVYVCTSLVDMYVKNHCLDKAHEVFRHAKNKNIYAWNSLISGYAFEGLFGDAEKLLNQMEEEGLKPDLVTWNGLILGYSMRGRVEEALTVINRIKSSGITPNVVSWTSLISGCSQNEKYIDALQIFSQMQEENVKPNATTICNLLCACAGPSLLKKGEEIHCLSMKLGFVDDIYVATSLIDMYCKAGKLKVAYNVFINVQKKTRPCWNCMMMGYAIHGHGEEVIILYDEMRERCIKPDAITFTALLSGCKNSGLVDEGWKYFDSMQDYNIVPTIEHYCCMIDLLGKAGFLDEASDFIETMPIKPDASIWGALLASCRIHKNIKLAEIAARKLFKLEPNNSANYVLMMNLYSSLNRWDDVERLKCSMTELAIRSPPVWSWTQVNQSIHVFSTDGKPHPEEGKIYFELYGLISEIRKLGYVADLNCVCKNIDDNEKEKILMSHTEKLAMVYGMMKMKGGSPIRVVKNTRICCDCHTVAKYISSARNCEILLRDGGRFHHFKNGKCSCNDRW* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1432 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Tpr5g1432 949 Gene3D Tetratricopeptide repeat domain 694 840 IPR011990 GO:0005515
Tpr5g1432 949 Gene3D Tetratricopeptide repeat domain 601 693 IPR011990 GO:0005515
Tpr5g1432 949 Gene3D Tetratricopeptide repeat domain 428 519 IPR011990 GO:0005515
Tpr5g1432 949 Gene3D Tetratricopeptide repeat domain 296 427 IPR011990 GO:0005515
Tpr5g1432 949 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 230 937 - -
Tpr5g1432 949 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 151 229 - -
Tpr5g1432 949 Gene3D Tetratricopeptide repeat domain 143 282 IPR011990 GO:0005515
Tpr5g1432 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Tpr5g1432 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 678 712 IPR002885 -
Tpr5g1432 949 TIGRFAM PPR: pentatricopeptide repeat domain 680 713 IPR002885 -
Tpr5g1432 949 TIGRFAM PPR: pentatricopeptide repeat domain 443 473 IPR002885 -
Tpr5g1432 949 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Tpr5g1432 949 TIGRFAM PPR: pentatricopeptide repeat domain 305 332 IPR002885 -
Tpr5g1432 949 TIGRFAM PPR: pentatricopeptide repeat domain 646 679 IPR002885 -
Tpr5g1432 949 TIGRFAM PPR: pentatricopeptide repeat domain 509 543 IPR002885 -
Tpr5g1432 949 TIGRFAM PPR: pentatricopeptide repeat domain 474 507 IPR002885 -
Tpr5g1432 949 TIGRFAM PPR: pentatricopeptide repeat domain 544 578 IPR002885 -
Tpr5g1432 949 Pfam E motif 759 821 IPR046848 -
Tpr5g1432 949 Pfam DYW family of nucleic acid deaminases 857 949 IPR032867 GO:0008270
Tpr5g1432 949 Pfam PPR repeat family 646 689 IPR002885 -
Tpr5g1432 949 Pfam PPR repeat family 541 589 IPR002885 -
Tpr5g1432 949 Pfam PPR repeat family 471 510 IPR002885 -
Tpr5g1432 949 PANTHER OS05G0586900 PROTEIN 151 229 - -
Tpr5g1432 949 PANTHER OS05G0586900 PROTEIN 230 937 - -
Tpr5g1432 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Tpr5g1432 949 Gene3D Tetratricopeptide repeat domain 531 600 IPR011990 GO:0005515
Tpr5g1432 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 643 677 IPR002885 -
Tpr5g1432 949 Pfam PPR repeat 617 637 IPR002885 -
Tpr5g1432 949 Pfam PPR repeat 235 261 IPR002885 -
Tpr5g1432 949 Pfam PPR repeat 373 398 IPR002885 -
Tpr5g1432 949 Pfam PPR repeat 306 331 IPR002885 -
Tpr5g1432 949 Pfam PPR repeat 716 740 IPR002885 -
Tpr5g1432 949 Pfam PPR repeat 338 357 IPR002885 -
Tpr5g1432 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Tpr5g1432 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1432 Tpr-Chr5 27359939 27364371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1432 166 949 Glycoside Hydrolase AT3G49170 30.576 6.35e-125 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1432 - - mtr:MTR_8g027810 1594.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1432 5 27359939 27364371 Tpr5g1432 5 27359939 27364371 ECH