Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1311 ATGCTCAGTAAGCTCCATTTCAAAAAGCAGCTCTCTTTCCCTCCATTCCCTTTCTCATTCTTCACAGAATGCTTCTGTTTCTCTTCTCACCAACCACATCCATGGAACTCCATAAGCAGACTCAGAGCTTCTATGCCAATTCCTGATCAAACCCATTTCAAAGACCCTAACATAGTTCACTTGTTCTGTTCCAAAGCCCTCAAAATCTCAGCCAAAAAGGGCTATCTTCCTGAAGGAAAACAGTTACATGCCCATTTGATAAAGTTTGGCTTTTGTCAAGTGCTTTCATTACAAAATCAGATTTTGAGTGTTTATCTTAAATGTAAAGAAACTGAGTATGCAGAGAAACTGTTTGAGGAATTGCCTGTGAGAAATGTTGTGTCGTGGAATATTATGATTCGCGGTATTGTTGGATCATGTGCCTATGAAAAGGAATCGTATCGTATTGAAGTTTGTTTTTCTTATTTTAGAAGGATGTTGTTGGAAATGGTAGTTCCTGATTATATAACTTTTAATGGTTTGATTTGTTTATGTGTTGAGTTTCATGATATTGAGATGGGAATTCAGTTGCATTGTTTTACTGTGAAAGTTAGATTTGATTTGGATTGTTTTGTTGGTTGTGCTCTTGTTGATTTATATGCAAAATGTGGTTTTGTTGAGATTGCAAGAAGGGTTTTTTGTGTTGCTCCATTTAGAGATTTGGTTATGTGGAATGTGATGATTTCATGCTATGCCTTCAATTGTTTACCAGAAGAGGCTTTTAGAATTTTCAATTTGATGCGGTTGGATGTTGCGAGTGCGGATGAGTTCACTTTTAGTAGTTTGCTTAGTGTAATAAGTGATGATGCTTTAGAATATTATGAATTTGGAAAGCAAATTCACAGTCTTGTTCTGAGACAGTCATTTGACTCAGATGTTTTAGTGGCTAGTGCTTTGATCAACATGTATGCTAAAAACAAAAATATAATCGACGCACGGAGAGTATTCGATGAGATGTTGGTTCGAAATGTTGTGGCTTGGAACACCATAATTGTCGGGTGTGGAAATCACGGTGATGGCAATGAGGTTATGAAGCTTCTCAGAGAGATGCTTCATGAAGGGTTTCTTCCCGATGAACTGACTATTTCCAGTATAATTAGTTCATGTGGCTATGCTTCTGCCATTACCGAAACACTGCAAGCGCATGCCTTTGCGGTTAAATTATCATGTCAAGGTTTTTTATCCGTTGCAAATTCTTTGATCAGTGCTTACTCCAAGTGTGGTAGCATTACTAGTGCATTCAAATGCTTTGAATTAACTTCAAAGCCTGATCTTGTTACATGGACTTCATTGATATATGCATATGCATTCCATGGTCTTGCAAAAGAAGCAACTGAGATGTTTGAGAAGATGCTATCTTGTGGCATGAAACCAGATCGAATAGCTTTTCTTGGTGTTCTCTCAGCTTGTTCTCATCGCGGGCTAGTGACAAAGGGACTTCACTACTTCAAATTAATGACCGATGTGTATCATATTGTTCCTGATTCAGAACATTACACTTGTCTTGTTGACCTGCTAGGAAGATATGGTCTTATAAATGAAGCTTTTGAAATCTTGAAATCAATGCCAATCGAAGCTGAATCAGATACCTTAGGAGCATTTATTGGATCTTGTAAACTACATTCAAATATCGGATTGGCTAAATTAGCTGCAGAAAAACTCTTCATCATCGAGCCAGAAAAGAGCGTAAACTATGCAGCAATGTCTAACATTTATGCTTCACAGAAACATTGGTGTGATGTGGAAAGAGTTCGAAAAACGATGGAAGAAAAACATGATACAAAAGTCCCAGGTTATAGTTGGATAGAGATTGGTAATCAAGTTCATTCATTTGTATCCAATGATAAATCACACCCTAATGCTTTAGAAATGTATGTTACATTAAACATGCTGCTAAGGTCAATGAAGGAACAAAATGGTATATAA 1965 0.37 MLSKLHFKKQLSFPPFPFSFFTECFCFSSHQPHPWNSISRLRASMPIPDQTHFKDPNIVHLFCSKALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCKETEYAEKLFEELPVRNVVSWNIMIRGIVGSCAYEKESYRIEVCFSYFRRMLLEMVVPDYITFNGLICLCVEFHDIEMGIQLHCFTVKVRFDLDCFVGCALVDLYAKCGFVEIARRVFCVAPFRDLVMWNVMISCYAFNCLPEEAFRIFNLMRLDVASADEFTFSSLLSVISDDALEYYEFGKQIHSLVLRQSFDSDVLVASALINMYAKNKNIIDARRVFDEMLVRNVVAWNTIIVGCGNHGDGNEVMKLLREMLHEGFLPDELTISSIISSCGYASAITETLQAHAFAVKLSCQGFLSVANSLISAYSKCGSITSAFKCFELTSKPDLVTWTSLIYAYAFHGLAKEATEMFEKMLSCGMKPDRIAFLGVLSACSHRGLVTKGLHYFKLMTDVYHIVPDSEHYTCLVDLLGRYGLINEAFEILKSMPIEAESDTLGAFIGSCKLHSNIGLAKLAAEKLFIIEPEKSVNYAAMSNIYASQKHWCDVERVRKTMEEKHDTKVPGYSWIEIGNQVHSFVSNDKSHPNALEMYVTLNMLLRSMKEQNGI* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1311 654 Gene3D Tetratricopeptide repeat domain 407 640 IPR011990 GO:0005515
Tpr5g1311 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 263 IPR002885 -
Tpr5g1311 654 Gene3D Tetratricopeptide repeat domain 186 285 IPR011990 GO:0005515
Tpr5g1311 654 Pfam PPR repeat family 233 277 IPR002885 -
Tpr5g1311 654 Pfam PPR repeat family 335 382 IPR002885 -
Tpr5g1311 654 PANTHER OS07G0578800 PROTEIN-RELATED 46 636 IPR045215 GO:0003723|GO:0009451
Tpr5g1311 654 PANTHER OS07G0259400 PROTEIN 46 636 - -
Tpr5g1311 654 Pfam E motif 554 616 IPR046848 -
Tpr5g1311 654 Pfam PPR repeat 439 468 IPR002885 -
Tpr5g1311 654 Pfam PPR repeat 99 125 IPR002885 -
Tpr5g1311 654 Pfam PPR repeat 411 431 IPR002885 -
Tpr5g1311 654 Pfam PPR repeat 511 535 IPR002885 -
Tpr5g1311 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Tpr5g1311 654 Gene3D Tetratricopeptide repeat domain 52 185 IPR011990 GO:0005515
Tpr5g1311 654 Gene3D Tetratricopeptide repeat domain 286 400 IPR011990 GO:0005515
Tpr5g1311 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Tpr5g1311 654 TIGRFAM PPR: pentatricopeptide repeat domain 310 338 IPR002885 -
Tpr5g1311 654 TIGRFAM PPR: pentatricopeptide repeat domain 235 261 IPR002885 -
Tpr5g1311 654 TIGRFAM PPR: pentatricopeptide repeat domain 338 372 IPR002885 -
Tpr5g1311 654 TIGRFAM PPR: pentatricopeptide repeat domain 439 472 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1311 Tpr-Chr5 25705789 25707985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1311 62 650 Glycoside Hydrolase AT3G49170 32.161 5.20e-103 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1311 - - gmx:100778378 960.288