Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1306 ATGTCTTCTCCAAGCAAGAGACGAGAGATGGACCTGATGAAATTGATGATGAGTGATTACAAGGTGGAAATGATTAACGATGGAATGCAAGAATTTTATGTCCATTTTCATGGACCCAATGAAAGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGAGTTGAGCTACCGGATGCTTATCCTTATAAATCTCCTTCGATAGGCTTCATCAATAAGATTTATCATCCAAATGTTGATGAGATGTCAGGATCGGTTTGTCTTGATGTTATCAATCAGACCTGGAGCCCCATGTTTGATCTTGTCAATGTATTTGAGGTGTTTCTGCCTCAACTCCTTCTGTATCCCAATCCATCGGATCCCTTGAATGGAGAGGCTGCAGCTTTAATGATGCGCGACAGACCTGCTTATGACCAAAGGGTTAAAGAATACTGTGAGAAGTATGCCAAGCCGGAAGACATTGGAGCTGCCACAGAAGAGAAATCCAGTGATGAAGAAGATGAGGAGCTAACTGAAGATGAATATGATTCTAGTGATGAACAGATTGCTGGTAAAGCCGACCCTTAG 561 0.4207 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYQGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPAYDQRVKEYCEKYAKPEDIGAATEEKSSDEEDEELTEDEYDSSDEQIAGKADP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1306 186 SUPERFAMILY UBC-like 4 148 IPR016135 -
Tpr5g1306 186 MobiDBLite consensus disorder prediction 157 175 - -
Tpr5g1306 186 CDD UBCc 7 143 IPR000608 -
Tpr5g1306 186 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Tpr5g1306 186 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Tpr5g1306 186 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Tpr5g1306 186 MobiDBLite consensus disorder prediction 149 186 - -
Tpr5g1306 186 SMART ubc_7 4 148 - -
Tpr5g1306 186 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Tpr5g1306 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-21 KDA 1 3 186 - -
Tpr5g1306 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1306 Tpr-Chr5 25627720 25631413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1306 26 167 Miscellaneous Gene Families AT1G17280 24.528 2.75e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1306 K10576 - gmx:548025 350.517