Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1250 ATGGAGGATTTAGATGACGAGGAAACATCATCAAATAATGTTGATGAAGTAAAAGTCACTAATACTCCATTGATTTGTGGCCTTCCTGATGATATTTCTCTTTTGTGTCTGGCAAGAGTTCCTCGAAAATATCATTCAGTTCTGAAGGCTGTCTCAAAAAGATGGAGGGACTTAGTTTGTAGTGAAGAGTGGCTTTATTATCGTAGGAAGCATAAACTTGATGAGACATGGATTTATGCTTTGTGCAGGGACAAATTGGATCACGTTTGCTGTTATGTATTGGATCCAACCTCATCAAAAAAATCTTGGAAGCTCATTCATGGGCTTCCGCTTCACATCGTTAGAAGGAAAGGCATGGGTTTTGAAGCTTTGGAAAATAAGCTATTCTTATTGGGTGGCTGTGGCTGGTCTGAAGATGCTACTGACGAGGTTTATTCATACAATGCTTCCTCGAACTCTTGGGTTGAAGCTGCTTCCTTGTCAACTGCTAGGTGCTACTTTGCTTGTGAAGTTATGGATGAAAAACTATATGCTATTGGTGGCATAGGTTCAAATTCAAGTGATCCTCATTCATGGGATACTTTTGATCCATACACAAATGCTTGGACATCTCACAGAGATCCTAATATCGTTCCCGAAATTGAAGATTCAGTAGTTATGGATGGTAAAATATACATCCGTTGTGGCAAATCTCCAGTTACACCTCATGTGTATGCTGTCGTTTACGAACCATCAAGTGGCACATGGCAGCATGCGGATGCTGACATGGTTTCAGGATGGAGAGGTCCTGCAGTTGTTGTCAACGGAATCCTTTTTGTTTTGGATCAAAGTTCGGGCACTAGGCTGACAATGTGGCATAAAGAAAGACGCGAGTGGATACTGGTTGGGAAGTTGTCACCATTGCTTACAAGACCACCCTGCCAACTTGTTGCAGTTGGTAAAAGCATTTACATTATCGGGAAAGGGCTTGGCACCGTCGCTGTTGATGTTGGTGATATTGGAAATATGGGAAGGGTGATGGTGGGTTCTTCTATACCCAAATTAGTCTCTGATTACAATGTAATTAGTTGTAAATGCTTGTCAATCTGA 1089 0.4141 MEDLDDEETSSNNVDEVKVTNTPLICGLPDDISLLCLARVPRKYHSVLKAVSKRWRDLVCSEEWLYYRRKHKLDETWIYALCRDKLDHVCCYVLDPTSSKKSWKLIHGLPLHIVRRKGMGFEALENKLFLLGGCGWSEDATDEVYSYNASSNSWVEAASLSTARCYFACEVMDEKLYAIGGIGSNSSDPHSWDTFDPYTNAWTSHRDPNIVPEIEDSVVMDGKIYIRCGKSPVTPHVYAVVYEPSSGTWQHADADMVSGWRGPAVVVNGILFVLDQSSGTRLTMWHKERREWILVGKLSPLLTRPPCQLVAVGKSIYIIGKGLGTVAVDVGDIGNMGRVMVGSSIPKLVSDYNVISCKCLSI* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1250 362 Pfam F-box domain 26 61 IPR001810 GO:0005515
Tpr5g1250 362 SUPERFAMILY Kelch motif 88 327 IPR015915 GO:0005515
Tpr5g1250 362 Pfam Kelch motif 163 203 IPR006652 GO:0005515
Tpr5g1250 362 Pfam Kelch motif 115 161 IPR006652 GO:0005515
Tpr5g1250 362 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 11 336 - -
Tpr5g1250 362 SMART fbox_2 28 68 IPR001810 GO:0005515
Tpr5g1250 362 Gene3D - 46 335 IPR015915 GO:0005515
Tpr5g1250 362 SMART kelc_smart 127 174 IPR006652 GO:0005515
Tpr5g1250 362 SUPERFAMILY F-box domain 22 69 IPR036047 GO:0005515
Tpr5g1250 362 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 11 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1250 Tpr-Chr5 24727518 24730980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1250 28 303 Miscellaneous Gene Families AT4G33900 25.763 4.48e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1250 - - gmx:100798211 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1250 5 24727518 24730980 Tpr5g1250 5 24727518 24730980 ECH