Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1204 ATGGCCATGGCGTCTCTAACTCAGCAACTTACTGGTGGTCTCAAGTGGACCCCATTCCTATCCAAACCAACAACATATCTGCAGAAACAAAAGCGCGGTGTTCTTCCTATTGTATGTTCCATTGCAATTTCAAGCACACAGAACAAAGAGAGAGCATTACTTGCAGAGATTTTTGCAGAAGCTTATGAGAATTGTCGTAATGCTCCATTGCAAGGTGTTTCATTCACTCTCGACCAACTCACTGAAACTGTTGATAAATATGATTTTGCGTCTGAAATTGGAAACAAGGTTACTGGCACTGTGTTTGGCTCTGATGCCAGTGGAGCTTTTGTTGACGTTACCTCAAAATCTACAGCATACTTGCCACTATTTGAGGCATCTATCCGCAAAATTAGGCATGTAGAAGATATAGGCTTAATTCCTGGCGCGACAGAGGAGTTTGTAATCATTGATGAAAATGAAGATGATGGTTTGCTCTTAAGTTTAAGATCTATCCAGTTTGACCTTGCATGGGAACGATGTAGGCAACTTCAGTCAGAAGATGTTGTTGTCAAGGGTAAGCTTATTGATTCAAATAAAGGTGGTCTGGTGGCTGAAGTTGAAGGCCTTAAGGGGTTTGTTCCATTCTCACAGTTGTCAACGAAACTGCCGGGAGAAGAGATTATTGAGATGGAGCTTCCTTTAAAGTTTGTGGAGGTTGACGAGGAAGAGTCCAGACTTATCCTTAGCCACCGCAAAGCTGTCGCTGGCATCCAGGCACAACTAGGAATTGGATCGGTAGTCACCGGGACCGTGCAAAGCCTAAAGCCATATGGTGCCTTTATTGACATCGGTGGAATTAGTGGCCTCCTTCATGTCAGCCAAATCAGTCATGATCGTATATCTGATATTGAAACTGTTCTTCAACCTGGAGATATTCTGAAGGTGATGATATTGAGTCATGATCGTGAGAGAGGCCGTGTAAGTCTTTCCACAAAGAAGTTGGAACCTACACCTGGAGACATGATTCGTAATCCAACGCTTGTCTTCGACAAGGCCGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCGCAAGCAGAAGCCATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTCAGCAGTGATGGGATCTTAGGACCACTTGGTTCAGATTTGCCTCTAGAGGGACTGGATCTGAGTGAGATACCCAAAGCTGAAGATTAA 1224 0.4428 MAMASLTQQLTGGLKWTPFLSKPTTYLQKQKRGVLPIVCSIAISSTQNKERALLAEIFAEAYENCRNAPLQGVSFTLDQLTETVDKYDFASEIGNKVTGTVFGSDASGAFVDVTSKSTAYLPLFEASIRKIRHVEDIGLIPGATEEFVIIDENEDDGLLLSLRSIQFDLAWERCRQLQSEDVVVKGKLIDSNKGGLVAEVEGLKGFVPFSQLSTKLPGEEIIEMELPLKFVEVDEEESRLILSHRKAVAGIQAQLGIGSVVTGTVQSLKPYGAFIDIGGISGLLHVSQISHDRISDIETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFDKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPLEGLDLSEIPKAED* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1204 407 CDD S1_RPS1_repeat_hs4 258 326 - -
Tpr5g1204 407 Coils Coil 343 363 - -
Tpr5g1204 407 ProSiteProfiles S1 domain profile. 258 326 IPR003029 GO:0003676
Tpr5g1204 407 CDD S1_RPS1_repeat_ec2_hs2 181 245 - -
Tpr5g1204 407 Gene3D - 250 330 IPR012340 -
Tpr5g1204 407 ProSiteProfiles S1 domain profile. 181 245 IPR003029 GO:0003676
Tpr5g1204 407 Gene3D - 77 173 IPR012340 -
Tpr5g1204 407 Pfam S1 RNA binding domain 181 245 IPR003029 GO:0003676
Tpr5g1204 407 Pfam S1 RNA binding domain 257 326 IPR003029 GO:0003676
Tpr5g1204 407 SUPERFAMILY Nucleic acid-binding proteins 176 248 IPR012340 -
Tpr5g1204 407 SUPERFAMILY Nucleic acid-binding proteins 89 187 IPR012340 -
Tpr5g1204 407 PANTHER 30S RIBOSOMAL PROTEIN S1 29 406 - -
Tpr5g1204 407 SMART S1_6 92 163 IPR022967 -
Tpr5g1204 407 SMART S1_6 256 326 IPR022967 -
Tpr5g1204 407 SMART S1_6 179 245 IPR022967 -
Tpr5g1204 407 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 29 406 - -
Tpr5g1204 407 Gene3D - 174 249 IPR012340 -
Tpr5g1204 407 ProSiteProfiles S1 domain profile. 94 163 IPR003029 GO:0003676
Tpr5g1204 407 SUPERFAMILY Nucleic acid-binding proteins 257 336 IPR012340 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1204 K02945 - gmx:100810511 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1204 5 23807438 23811444 Tpr5g1204 5 23807438 23811444 ECH