Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1200 ATGGTGAAGGTTCGTATGAACACGGCCGATGTCGCCGCCGAAGTCAAATGTCTCCGGCGGTTAATCGGAATGCGATGCTCCAATGTGTATGATCTCACTCCCAAGACGTACGTTTTCAAGCTTATGAATAGCAGTGGAGTCTCTGAATCAGGTGAAAGCGAGAAGGTTTTGCTACTCATGGAAAGTGGTGTTAGATTGCACACTACTGTTTATATGCGTGACAAAAGCAACACTCCTTCTGGTTTTACACTCAAATTGAGGAAACATATTCGAACTAGAAGGCTTGAGGATGTGCGACAACTTGGGTATGATCGGATTGTTCTTTTTCAATTTGGACTTGGGGAGAATGCAAACTATGTTATATTAGAGTTATATGCTCAGGGCAACGTCATCCTTACGGATTCTAGCTTCACTGTCATGACTCTACTTCGATCTCACAGGGATGATGATAAAGGGCTTGCAATCATGTCACGCCATCGTTATCCAGTAGAAAGTTGTCGAGTTTTTGAACGAACAAATACATCAAAGCTGCAGACAGCCCTAACATCTTCCAAGGAAGATGACAATGATGAGGCTGTTAAGGCCAATGGAAATGGAACTGATGCTTCTAATGTAGAAAGAGAGAAGCAGGGATCCCGGAAAGGTGGGAAGTCATTTGCCACTTTGAAAATTATCCTTGGGGAGGCACTCGGTTATGGACCTGCCCTTTCTGAACACATGATATTAGATGCTGGTTTAATCCCCAATGAGAAAGTACCCAAAGATAAAACGTGGGACGATGCCACTGTTCAGGCATTGGTCCAAGCAGTTGCAAAGTTTGAAGATTGGATGCAGGATATCATTTCAGGTGAAATAGTTCCAGAAGGATACATTTTGATGCAAAACAAAAATTTGGGGAAGGATTCTTCTGTATCCCAACCTGAAAGTCTTAAACAGATCTATGATGAGTTCTGCCCCATCTTACTTAACCAGTTTAAGTCAAGGGAACACACAAAGTTTGAGACATTTGATTTAGCCTTGGATGAATTCTACAGCAAAATTGAGAGTCAAAGGTCTGAACAACAGCACAAAGCCAAAGAGAACTCAGCTCTTCAGAAACTTAATAAGATACGCAACGATCAGGAAAATCGAGTGCACACTTTGAGGAAAGAGGCAGATCACTGTATTCAAATGGCAGAATTGATAGAGTATAACTTGGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTATATCTTGCTAAGGGTATGAGTTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCCGGAAACCCAGTAGCTGGTCTTATTGACAAGCTCCATCTTGAAAGAAATTGCGTGACTTTACTGTTGAGCAACAATCTCGACGAAATGGATGATGATGAGAAGACACTCCCTGCGGATAAGGTTGAAGTTGATTTAGCTCTCTCAGCACATGCCAATGCTCGGAGGTGGTACGAACTGAAGAAAAAACAAGAAAGCAAACAGGAAAAGACTATTACTGCACATGAAAAAGCTTTTAAAGCCGCAGAGAGAAAGACTCGCCTACAGCTTAGTCAGGAAAAAACTGTTGCCTCAATTTCGCATATGCGCAAAGTTCACTGGTTTGAGAAATTTAACTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGACGTGATGCTCAGCAAAATGAGATGATAGTGAAGCGTTATATGTCAAAAGGAGATCTGTATGTGCATGCTGAACTGCATGGAGCTTCTAGCACAGTTGTCAAGAATCACAAACCTATGCAGCCAGTTCCGCCGCTGACCCTAAACCAAGCAGGATGTTTCACAGTCTGCCAAAGCCAGGCATGGGATTCAAAAATGGTTACCAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACTGCTCCTACTGGGGAATATCTGACAGTAGGGAGTTTCATGATACGGGGAAAGAAAAATTATCTTCCACCACACCCTCTTATCATGGGTTTTGGCCTGCTATTTCGCTTGGATGAGAGTTCACTGGGATCACATTTAAATGAAAGGAGAGTAAGAGGAGAGGAGGAGGAAACAATAGATGATAATGCAGAAACTGGCCCTGTTGAAGAACAATCTGATTCAGAGTCTGAGAAGGATGTTGCTGATGGAGAATCTGCTGCAGACTCAGAAAGGAATGGTAAGCCATCTGCAGATTCACCCATACCCCTATCGGAAGACTTTCCTGCCGACACATCTCAAACTAGTTTGGATACCATTAATGCCAAAACTACAGTTTCAGATGATACTTTTGCAAAAGATACAAGTACGACAAATATGCTTGAGAGTGAGAAATTACCTGACATCGGTGGAAATGGCTCAACATCTGTCTCCCCTCAGCTTGAGGAACTTCTTGATCGAGCTCTAGGACTTGGATCTGTTGCCAAATCAAATAAAAGTTATGGAGCTGAGAACACTCAGGTTGATTTAAGCAGTGAGAACCACAATATCGAGCCGAGCAAACCTGCAGTAAGGGATAAACCGTATATATCAAAAGCTGAGAGAAGAAAGCTTAAAAATGAACCGAAACATGGAGAAGCATATCCAAGCGATGAACATGGAAAGGACAAATCAAAGATAAAAGATATTTCTGGTAATCTGCATGCAAAAGATGCTCAAAATTTGAAGACAGGCGGTGGTAAAAAAGTCAGTCGTGGACAAAAGGGAAAGCTTAAGAAAATAAAGGAGAAGTATGCTGACCAAGATGAGGAAGAAAGGAGCATCCGAATGACATTATTGGCCTCTTCCGGAAAACCAATCAAGAAGGAAGAGACATTACCTGTAAATGAATCTTCGGACAAAGGGAAAAAATCTGACAATGGTCCTATAGATGCTCCAAAAATATGTTACAAGTGTAAGAAGGTGGGTCATTTATCTCGGGATTGTAAGGAGCAATCAAATGATCAGTTGCACAGTCATGCAATCAGTGAAGCTGAAGAAAATCCCAACACAAGTGCTTTAAACACTTCCGTAGATGACAGAGTGGCGATGGAAGAAGATGATATTAATGAAATAGGAGAAGAAGAGAAAGAAAAACTGAATGATGTGGATTACTTGACAGGGAATCCACTCCCAAATGACATTCTCTTATATGCTGTTCCTGTATGTGGTCCATACAACGCAGTTCAGTCTTACAAGTATCGAGTGAAGATAATTCCTGGACCTGTGAAGAGAGGGAAAGCTGCAAAAACTGCAATGAACTTATTCAGCCACATGTCAGACGCAACAAATCGGGAGAAGGAGTTGATGAAAGCCTGCACAGATCCTGAATTAGTTGCTTCAATTATTGGTAATGTGAAGATAACTGCAGCTGGCCTTACTCAATTAAAGCAAAAACAAAAGAAAGGCAAGAAGACCGCCAAACAAGCAAGTTAG 3417 0.4182 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHTTVYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIVLFQFGLGENANYVILELYAQGNVILTDSSFTVMTLLRSHRDDDKGLAIMSRHRYPVESCRVFERTNTSKLQTALTSSKEDDNDEAVKANGNGTDASNVEREKQGSRKGGKSFATLKIILGEALGYGPALSEHMILDAGLIPNEKVPKDKTWDDATVQALVQAVAKFEDWMQDIISGEIVPEGYILMQNKNLGKDSSVSQPESLKQIYDEFCPILLNQFKSREHTKFETFDLALDEFYSKIESQRSEQQHKAKENSALQKLNKIRNDQENRVHTLRKEADHCIQMAELIEYNLEDVDAAILAVRVYLAKGMSWDDLARMVKEEKKAGNPVAGLIDKLHLERNCVTLLLSNNLDEMDDDEKTLPADKVEVDLALSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVASISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVVKNHKPMQPVPPLTLNQAGCFTVCQSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNYLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEETIDDNAETGPVEEQSDSESEKDVADGESAADSERNGKPSADSPIPLSEDFPADTSQTSLDTINAKTTVSDDTFAKDTSTTNMLESEKLPDIGGNGSTSVSPQLEELLDRALGLGSVAKSNKSYGAENTQVDLSSENHNIEPSKPAVRDKPYISKAERRKLKNEPKHGEAYPSDEHGKDKSKIKDISGNLHAKDAQNLKTGGGKKVSRGQKGKLKKIKEKYADQDEEERSIRMTLLASSGKPIKKEETLPVNESSDKGKKSDNGPIDAPKICYKCKKVGHLSRDCKEQSNDQLHSHAISEAEENPNTSALNTSVDDRVAMEEDDINEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYNAVQSYKYRVKIIPGPVKRGKAAKTAMNLFSHMSDATNREKELMKACTDPELVASIIGNVKITAAGLTQLKQKQKKGKKTAKQAS* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 706 726 - -
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 977 1008 - -
Tpr5g1200 1138 Gene3D - 958 1007 - -
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 680 741 - -
Tpr5g1200 1138 Pfam Zinc knuckle 962 978 IPR001878 GO:0003676|GO:0008270
Tpr5g1200 1138 Pfam NFACT N-terminal and middle domains 10 161 - -
Tpr5g1200 1138 Pfam NFACT N-terminal and middle domains 226 523 - -
Tpr5g1200 1138 Coils Coil 357 384 - -
Tpr5g1200 1138 SUPERFAMILY Retrovirus zinc finger-like domains 947 981 IPR036875 GO:0003676|GO:0008270
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 833 880 - -
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 907 923 - -
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 812 954 - -
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 180 214 - -
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 937 954 - -
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 769 789 - -
Tpr5g1200 1138 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1126 - -
Tpr5g1200 1138 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Tpr5g1200 1138 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
Tpr5g1200 1138 ProSiteProfiles Zinc finger CCHC-type profile. 963 978 IPR001878 GO:0003676|GO:0008270
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 990 1005 - -
Tpr5g1200 1138 MobiDBLite consensus disorder prediction 812 832 - -
Tpr5g1200 1138 SMART c2hcfinal6 962 978 IPR001878 GO:0003676|GO:0008270
Tpr5g1200 1138 PANTHER - 3 1126 - -
Tpr5g1200 1138 Pfam NFACT protein C-terminal domain 1023 1115 IPR021846 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1200 K24971 - gmx:100807437 1850.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1200 5 23767798 23777938 Tpr5g1200 5 23767798 23777938 ECH