Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1198 ATGTTCTTCAGTGGCGATCCTTCTAATCGTAAACGCGTCGATTTAGGTGGTCGCAGTACGAAGGAAAGAGATAGAAAGAATCTTCTTGAACAGACTCGATTGGAAAGGAATCGACGGTTGTGGTTGCGTCAGCAGAACTCTGCTGCACTTCGGATTCAGAAATGCTTCAGAGCGAAAAAAGTTGTCAGAACGGAACACTCTAAGTTGCGACAGAAATTCCTTAAAATCTATGGGACGAACTGCCTTAATGTTGACAGGAAAGCTTTTGGTCCAGATTCTGATTTCCTCCGCCAGTTCCTCTATTTCTTTAATGTGGAAAACCATGATGATTTTTTAGTTCTTGTGCAAATTTGCCGATTGATTCTACAGTTTGTTCAAGAAAGTGGGGATGCTGTGAGACTTTTTGCTGGTGAAGATTACTCATCCATATGTGCTTTTGTGAACTGCCGACTGAAGAAGCTTGCATATAATTGTATTCGTGCAGTACATCATAACAGAAATCAGTTAAAGGATCAACTTTTATTGACTCCGAAGGAGTCTAATGCATCAGCTATTCCTTTATTGGAAGTTTTATTACTGTTGATAGACCTCAAACTGCCATGGAGCTGTAAGATAGTAGGATATCTCTCTCAAAACAATGGATTCGGCCTACTTAGAGAGATTATTCTGACAGGAAAGGATAATGCAGAAAAATGTATTGAATCGTCTTTGGAGCATGTGCTTACAGGTGTAATGTGTCACATTGGTCAGAATCCATGTATCTGTTCAGACATTGATCCAAGATATAGCTTCTCATCGCAGATCCTTACAATTCCTTTCTTATGGCATGTTTTTCCAAACTTAAGACAGGTTTTTGCAAGAAAGGGAATGGGCCAGCATTACATTCATCAAATGGCGACGTTTGTGCCAAATCTGATCAATTTTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGCGGGGTTTCTTTGTCTCAACCCGACTGTTCATTCGATATGGCCATAGACCTTGCAGCTGTTACTACATTTTTACTGGAGGCACACCCCTCTCTGACAAGATCTGATACTAGACAAAATTCTGTGATCGCTGAGGATGATACGACTGGCGATGAAGTCATGGAAGTAGCTCTGGATAGAAAATTAGATCAACAAATTTGTAGTTCCATAGATACTCGCTTCCTTCTCCAACTGACAAATATATTATTTAGAGATATTTCATCTGCAAATGGGCCAGATGATATGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTCAACACATTGCCACTTGAAAGGATTATGACTGTGCTCGCCTACAGAACTGACCTTGTTCCTATGCTTTGGAATTTTATGAAGCGGTGCCATGAGAACAAAAAATGGTCAACTTTGTCTGAGCGGTTATCATACCTCTCAGGGGATGCCCCTGGTTGGCTGTTACCTCTTGCTGTATTCTGTCCTGTCTACAAGCATATGCTTATGATAGTTGATAATGAGGAATTTTATGAGCAGGAGAAACCCCTATCACTGAAGGATATCAGCAGCCTCATCATTCTATTGAAGCAGGCTCTGTGGCAGCTACTGTGGGTAAATCATACCTCATCTGCTAATTCAGTTAGGTCTAATGCAGTTAGGACAAGCAGTAAAAAGCTTTCAATTGATGGCATTCAACAGAGGGTTAGCATAGTTGTCTCTGAGCTCCTGTCCCAGCTCCAAGATTGGAACAATAGACGACAGTTTACATCCCCCAGTGATTTCCATGCTGATGGGGTGAATGACTTTTTTATCTCCCAGGCTGTTATAGAAAATGCACGAGCAAATGAAATTTTAAAGCAGGCTGCTTTCTTGATACCATTTACAAGCAGGGTTAAAATTTTCACTTCTCAACTAGCTGCAGCTAGGCAAAGACAAGGATCTCAAGCTGTATTTACTAGAAACCGGTTCAGAATAAGACGTGATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGATGATCTTCGAGGACTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAAGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGGGCTTCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCGGATCATCTGCTTTATCCAAATCCTGGATCTGGAATGATACATGAACAACATCTCCAATTTTTCCACTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTCGAAGGGATTCTTGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAGAAGCACAACTATTTGAATGACCTGCCTTCCTTGGACCCTGAATTATATCGCCATCTTATCTTTCTAAAGCGTTTTGAGGGTGACATTTCGGAGTTAGAACTATACTTTGTTATATTAAATAATGAATATGGAGAGCAAACAGAAGAGGATCTGCTTCCAGGGGGAAAGAACCTGCGTGTCACAAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAATCATCGCTTGAATTCTCAGATACGTCAACAAAGTTCTCATTTCTTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGATCACTTGATAGCTTGGATGTTGATGATTTGCGGCAGCATACGAATTATGCAGGAACCTATCATAGTGAGCACAATGTGATTGAGATGTTCTGGGAAGTACTCAAAGGATTTTCAATGGAAAACCAGAAGAAATTCTTAAAGTTTGTGACAGGTTGCTCCAGAGGACCGTTGCTTGGATTCCGTTATCTTGAGCCTTTGTTCTGCATACAAAGGGCTGGTGGTAATGCTTCTGAGGATGCTCTGGACAGATTACCAACATCGGCTACCTGTATGAATCTGTTAAAGCTTCCACCATATAGAAGTAAGGATCAACTGGAATCCAAACTATTGTATGCCATAAATGCTGATGCTGGCTTTGATTTGAGTTAA 3072 0.4004 MFFSGDPSNRKRVDLGGRSTKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQKCFRAKKVVRTEHSKLRQKFLKIYGTNCLNVDRKAFGPDSDFLRQFLYFFNVENHDDFLVLVQICRLILQFVQESGDAVRLFAGEDYSSICAFVNCRLKKLAYNCIRAVHHNRNQLKDQLLLTPKESNASAIPLLEVLLLLIDLKLPWSCKIVGYLSQNNGFGLLREIILTGKDNAEKCIESSLEHVLTGVMCHIGQNPCICSDIDPRYSFSSQILTIPFLWHVFPNLRQVFARKGMGQHYIHQMATFVPNLINFLPKDISDEFPTYACLLGNILETGGVSLSQPDCSFDMAIDLAAVTTFLLEAHPSLTRSDTRQNSVIAEDDTTGDEVMEVALDRKLDQQICSSIDTRFLLQLTNILFRDISSANGPDDMEVAAVGAVCGFLYVIFNTLPLERIMTVLAYRTDLVPMLWNFMKRCHENKKWSTLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDISSLIILLKQALWQLLWVNHTSSANSVRSNAVRTSSKKLSIDGIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVIENARANEILKQAAFLIPFTSRVKIFTSQLAAARQRQGSQAVFTRNRFRIRRDHILEDAYNQMSQLSEDDLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRASFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKRFEGDISELELYFVILNNEYGEQTEEDLLPGGKNLRVTNENVITFIHLVANHRLNSQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGTYHSEHNVIEMFWEVLKGFSMENQKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEDALDRLPTSATCMNLLKLPPYRSKDQLESKLLYAINADAGFDLS* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1198 1023 Gene3D Hect, E3 ligase catalytic domain 787 866 - -
Tpr5g1198 1023 Gene3D Hect, E3 ligase catalytic domains 663 901 - -
Tpr5g1198 1023 Pfam HECT-domain (ubiquitin-transferase) 718 1023 IPR000569 GO:0004842
Tpr5g1198 1023 ProSiteProfiles HECT domain profile. 682 1023 IPR000569 GO:0004842
Tpr5g1198 1023 SUPERFAMILY Hect, E3 ligase catalytic domain 653 1015 IPR035983 GO:0004842
Tpr5g1198 1023 CDD HECTc 661 1021 IPR000569 GO:0004842
Tpr5g1198 1023 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1023 IPR044611 GO:0000209|GO:0061630
Tpr5g1198 1023 SMART hect_3 680 1023 IPR000569 GO:0004842
Tpr5g1198 1023 Gene3D Hect, E3 ligase catalytic domain 905 1022 - -
Tpr5g1198 1023 PANTHER BNAC01G43970D PROTEIN 1 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1198 Tpr-Chr5 23739719 23763556 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1198 K10589 - gmx:100787467 1742.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1198 5 23739719 23763556 Tpr5g1198 5 23739719 23763556 ECH