Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1060 ATGGGTGTTTTAAATTTTGAGGATGAGACAACTTCCATTGTAGCTCCTGCTAGACTTTACAAAGCTCTAGTTACGGATGCTGATATCCTTACCCCAAAGGTTATTGATGATATTAAGAGTGTTGAAATTGTTGAAGGAAATGGTGGTGCCGGAACTATCAAGAAACTCACTTATGTTGAAGATGGTGAAACCAAGCATGTGTTGCAGAAAGTTGATTTAGTAGATGATGCTAACTTGGATTACCACTACAGCATAATTGGTGGTGATGGGCTTCCAGACACAGTTGAGAAGATTTCATTTGAGGCTAAATTGTCTGCAGGCCCAAATGGAGGATCCATTGCAAAGCTAAGTGTGAAATACACCACCAAAGGTGATGTTATTCCTAGTGAAGAGGAACTCAAGAGTAACAAAGCTAAGGGTGATGGTCTTTTCAAGGCCCTTGAGGGTTATGTTTTGGCTAATCCTGATTACAACTAA 477 0.4004 MGVLNFEDETTSIVAPARLYKALVTDADILTPKVIDDIKSVEIVEGNGGAGTIKKLTYVEDGETKHVLQKVDLVDDANLDYHYSIIGGDGLPDTVEKISFEAKLSAGPNGGSIAKLSVKYTTKGDVIPSEEELKSNKAKGDGLFKALEGYVLANPDYN* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1060 158 PANTHER - 1 157 - -
Tpr5g1060 158 CDD Bet_v1-like 6 151 - -
Tpr5g1060 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g1060 158 PANTHER ABA-RESPONSIVE PROTEIN 1 157 - -
Tpr5g1060 158 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Tpr5g1060 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g1060 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g1060 158 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g1060 158 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g1060 158 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g1060 158 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g1060 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tpr5g1060 158 Gene3D - 2 158 IPR023393 -
Tpr5g1060 158 SUPERFAMILY Bet v1-like 2 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1060 Tpr-Chr5 21381253 21383308 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1060 - - gmx:100500525 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1060 5 21381253 21383308 Tpr4g1962 4 20391618 20393112 PCT