Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0829 ATGAAGATGATTCTAACTATCTTCTTTATTTTTTCTCTCATTTCCATTTCTCATGCATCCGTAGTTGATTTCTGCGTAGCAGATTACAATGCACCAAAAACTCCGGTCGGATATTCTTGCAAATCACCAGAAATTGTAACCGTGGAAGACTTTGTCTACCACGGCCTAAACAAAATCGGAAACACATCAAACATTTACAAAGTCTCTTTTCAACCTGCATTCGACGAGCAATTTCCCGGTGTAAATGGACTCGGAGTATCTATAGCGCGTTTAGATATCCTTCAAGGTGGAGTTGTTCCACTTCACACACACCCTGATGCTTCAGAAGTGTTGCTTGTTACACAAGGAAACATAGTTGCTGGCTTTGTTTCCTCCAACAAAGTTGCTTACATTAAAACTCTTCACAAAGGTGATGTTATGGTTTTTCCACAAGGGTTGTTGCATTTCCAAATTAATAGTGGTGGTAATACTGCAATTGCTTATACTAGCCATAGTAGTGAAAATCCCGGTGTACAAATATTGGATTTGGCTTTGTTTAGAAACAATTTTCCATCTTGGATTATTAATGCAACTACTTTTATTGATTATGCTGAGGTGAAGAGGATCAAGGCTCTTTTTCAAGGTAGTGATTAA 633 0.3791 MKMILTIFFIFSLISISHASVVDFCVADYNAPKTPVGYSCKSPEIVTVEDFVYHGLNKIGNTSNIYKVSFQPAFDEQFPGVNGLGVSIARLDILQGGVVPLHTHPDASEVLLVTQGNIVAGFVSSNKVAYIKTLHKGDVMVFPQGLLHFQINSGGNTAIAYTSHSSENPGVQILDLALFRNNFPSWIINATTFIDYAEVKRIKALFQGSD* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0829 210 SMART Cupin_1_3 54 200 IPR006045 -
Tpr5g0829 210 CDD cupin_OxOx 17 206 - -
Tpr5g0829 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Tpr5g0829 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Tpr5g0829 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Tpr5g0829 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Tpr5g0829 210 Gene3D Jelly Rolls 18 210 IPR014710 -
Tpr5g0829 210 PANTHER GERMIN-LIKE PROTEIN 11 207 - -
Tpr5g0829 210 SUPERFAMILY RmlC-like cupins 21 204 IPR011051 -
Tpr5g0829 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 11 207 - -
Tpr5g0829 210 Pfam Cupin 55 183 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0829 Tpr-Chr5 15111667 15112383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0829 1 210 Miscellaneous Gene Families AT5G20630 59.242 1.66e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0829 - - gmx:100806553 276.944