Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0778 ATGGAGTGCGTTGGAGCTAGAAACTTAGCAGCAATGGCGTTTTGCTTAAGTCCTTCTTCAAGATTACGGTTAAGGAGGAAGAAGCTTTGGATAAGAAGAGGAGTTTCGAGTAACGCGATTCGGTTGCGTTCGCATTCGCTGAAATTGGAAGCAAAAGCAGGTACGGGAAGCGAGAGTTGCGTTGTTGATAGAGAGGATTTTGCTGATGAGGAAGATTTTGTTAAAGCTGGTGGCTCTGAACTTGTTTTCGTTCAAATGCAGCAGAAGAAATCAATGGAAATGCAGTCGAAGCTTGCTGATAAGTTGCCACCTATCTCTATTGGAGATGTACTGGATCTAGTTGTGATTGGTTGTGGTCCTGCTGGTCTTGCCCTAGCTGCTGAATCTGGCAAGTTAGGCTTAAAAGTTGGGCTTATAGGTCCGGATCTCCCGTTTACAAACAATTATGGTGTGTGGGAGGACGAATTTAAAGGTCTTGGACTTGAAGGTTGTATTGAGAATGTTTGGAAGGATACCGTTGTATATATTGATAATAAAGAACCCATTTTAGTTGGACGTTCTTATGGCCGAGTCAGTCGACATTTGCTTCACGAGGAATTGTTAAGAAGGTGTGTCGAGTCAGGTGTCTCATACCTTGGCTCAAGAGTAGAAAGGATTGTTGAGGCTAGCAATGGTCATAATCATGTCGTCTGTGAATATGATACAGTAGTTCCCTGCAGGCTTGCTACTGTTGCATCAGGAGCAGCTTCAGGGAAACTATTGCAGTATGAGGTTGGGGGTCCGAAGGTGTGTGTACAAACAGCTTATGGTGTGGAAGTTGAGGTGGAAAACAATCCTTATGATCCAAATGTGATGGTTTTCATGGATTACAGAGACTATATGAAGAAAAATGTTCAAAGTCTAGAAGATAAATATCCAACATTTCTTTATGTGATGCCCATGTCTCCTACGAAAGTGTTCTTCGAGGAAACATGTTTGGCATCAAAAGATGCCATGCCTTTTGATTTATTAAAGCAAAAGCTCTTTTCAAGATTAAATACGATGGGGATCAGAATTTCAAAAACTTATGAAGAGGAATGGTCTTATATCCCAGTTGGTGGATCATTACCGAACACAGAGCAGAAGAACCTTGCATTTGGTGCAGCTGCCAGCATGGTGCATCCAGCCACAGGCTACTCTGTTGTGAGATCGTTGTCAGAAGCTCCGGAATATGCTAAAGTAATTGCTACTATTTTGAATGAGAGTAATACAGGGGACACTGTTACTCGTGAAAGAATTAAAGAGAATCCATCTATGCGAGCTTGGAATACACTTTGGCCACAAGAAAGGAAACGGCAGAGGTCATTCTTTCTTTTTGGATTAGCACTAATTGTGCAGCTGGACATTGAGGGCACTAGAACATTTTTTCGTACTTTCTTCTGCTTACCTGAATGGATGTGGCAAGGATTTCTTGGTTCTTCTCTATCCTCGAAAGATCTTCTATTATTTGCACTCTACATGTTCATAATAGCACCAAATGACTTAAGAATGTCTCTAGTCAGACATCTGCTTTCAGATCCTACAGGGAAGACTATGATAAAAACCTACTTGACGATATAG 1599 0.4159 MECVGARNLAAMAFCLSPSSRLRLRRKKLWIRRGVSSNAIRLRSHSLKLEAKAGTGSESCVVDREDFADEEDFVKAGGSELVFVQMQQKKSMEMQSKLADKLPPISIGDVLDLVVIGCGPAGLALAAESGKLGLKVGLIGPDLPFTNNYGVWEDEFKGLGLEGCIENVWKDTVVYIDNKEPILVGRSYGRVSRHLLHEELLRRCVESGVSYLGSRVERIVEASNGHNHVVCEYDTVVPCRLATVASGAASGKLLQYEVGGPKVCVQTAYGVEVEVENNPYDPNVMVFMDYRDYMKKNVQSLEDKYPTFLYVMPMSPTKVFFEETCLASKDAMPFDLLKQKLFSRLNTMGIRISKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPEYAKVIATILNESNTGDTVTRERIKENPSMRAWNTLWPQERKRQRSFFLFGLALIVQLDIEGTRTFFRTFFCLPEWMWQGFLGSSLSSKDLLLFALYMFIIAPNDLRMSLVRHLLSDPTGKTMIKTYLTI* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0778 532 TIGRFAM carotene-cycl: lycopene cyclase family protein 112 512 IPR010108 GO:0016117|GO:0016705
Tpr5g0778 532 SUPERFAMILY FAD/NAD(P)-binding domain 111 505 IPR036188 -
Tpr5g0778 532 Gene3D - 110 449 IPR036188 -
Tpr5g0778 532 PANTHER - 5 491 - -
Tpr5g0778 532 PANTHER LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC ISOFORM X1 5 491 - -
Tpr5g0778 532 Pfam Lycopene cyclase protein 112 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0778 Tpr-Chr5 13563705 13570315 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0778 K06444 - gmx:100790686 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0778 5 13563705 13570315 Tpr5g0778 5 13563705 13570315 ECH