Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0736 ATGGAGACTCCTCCTTCAACACAAGGTGGTGTAGTGAAGAAGAAGGAAACAAGAGGTAGAAAACCTAAACCAAAGGAAGACAAAAAAGATGAACAACAACAAAATGTCAAATCACCAAGAGAATCGAAAAAATCACAACAACATCAACAAAATCAACAACATCAACAACAACATCAAGCTTCTGTTGACGAGAAATACACTCAATGGAAATCTCTTGTTCCTGTTCTTTATGATTGGCTCGCTAATCATAATCTTGTTTGGCCTTCTCTCTCTTGCCGTTGGGGTCCTCAGCTTGAACAAGCTACTTATAAGAATCGACAGCGATTATATCTTTCTGAGCAGACTGATGGTAGTGTTCCGAATACTTTGGTGATTGCGAATTGTGAGGTTGTCAAGACTAGGGTTGCAGCTGCAGAGCATATTTCTCAGTTTAATGAAGAGGCCCGCTCTCCATTTGTGAAGAAGTACAAGACTATCATACATCCAGGAGAGGTGAACAGAATTAGAGAATTGCCACAAAATTCCAAGATTGTGGCTACTCACACGGACAGCCCTGATGTTCTCATTTGGGATGTTGAAAGTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAATTCTCGACCTGATTTGATATTGACCGGACACCAAGATAATGCAGAGTTTGCTCTTGCAATGTGCCCAACTGAGCCCTATGTGCTTTCCGGAGGAAAGGATAAAACAGTGGTGTTGTGGAGTATTGAAGACCATGTAACATCTTCTGCTACAGACTCCAAATCTGGTGGATCCATTATCAAACAAAAATCTGGGGAAGGTAATGACAAAAATGTTGATAGCCCTTCTGTCGGACCAAGAGGTATCTATTCTGGTCATGATGATACTGTTGAAGATGTGGCTTTTTGCCCTTCTAGTGCGCAGGAATTCTGTAGTGTTGGAGATGATTCTTGTCTCATATTATGGGACGCACGTGTTGGCTCAAGTCCTGCGGTTAAGGTTGAAAAAGCTCACGATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATAATAATCTGATTCTTACTGGGTCTGCGGATAATTCTGTTCGCTTGTTCGATCGTCGTAATCTCACCTCCAATGGGGTTGGATCTCCCATCCATATATTTGAGGCTCATAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAAGCATCCATATTTGGAAGTTCAGCAGAAGACGGTCTCTTGAACATTTGGGATTATGAGAAGGTTGGTAAAAAGATAGAGCGAGCTGGAAAAACAATAAATTCTCCTGCAGGGCTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTTCACTGGAATGCATATGATCCATGGACAATTGTTAGTGTGTCCGATGATTGTGAAAGTACTGGCGGAGGAGGAACATTGCAGATATGGCGCATGAGTGACTTGCTTTACAGACCAGAGGATGAGGTTTTGGAAGAGCTGGAGAAATTCAAAGCTCATGTGGTGGCTTGTGCTGCAAAGACCGAGAAGGCCGAAAAATGA 1548 0.427 METPPSTQGGVVKKKETRGRKPKPKEDKKDEQQQNVKSPRESKKSQQHQQNQQHQQQHQASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSSATDSKSGGSIIKQKSGEGNDKNVDSPSVGPRGIYSGHDDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPAVKVEKAHDADLHCVDWNPHDNNLILTGSADNSVRLFDRRNLTSNGVGSPIHIFEAHKAAVLCVQWSPDKASIFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPAGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLEELEKFKAHVVACAAKTEKAEK* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0736 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 366 IPR001680 GO:0005515
Tpr5g0736 515 MobiDBLite consensus disorder prediction 1 62 - -
Tpr5g0736 515 MobiDBLite consensus disorder prediction 256 276 - -
Tpr5g0736 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 366 - -
Tpr5g0736 515 MobiDBLite consensus disorder prediction 256 281 - -
Tpr5g0736 515 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 43 509 - -
Tpr5g0736 515 MobiDBLite consensus disorder prediction 20 44 - -
Tpr5g0736 515 Pfam WD domain, G-beta repeat 334 366 IPR001680 GO:0005515
Tpr5g0736 515 Pfam WD domain, G-beta repeat 286 321 IPR001680 GO:0005515
Tpr5g0736 515 Pfam WD domain, G-beta repeat 211 246 IPR001680 GO:0005515
Tpr5g0736 515 Pfam WD domain, G-beta repeat 376 415 IPR001680 GO:0005515
Tpr5g0736 515 MobiDBLite consensus disorder prediction 45 62 - -
Tpr5g0736 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 417 - -
Tpr5g0736 515 PANTHER WD40 REPEAT FAMILY 43 509 - -
Tpr5g0736 515 SMART WD40_4 433 480 IPR001680 GO:0005515
Tpr5g0736 515 SMART WD40_4 281 321 IPR001680 GO:0005515
Tpr5g0736 515 SMART WD40_4 206 246 IPR001680 GO:0005515
Tpr5g0736 515 SMART WD40_4 375 415 IPR001680 GO:0005515
Tpr5g0736 515 SMART WD40_4 326 366 IPR001680 GO:0005515
Tpr5g0736 515 SMART WD40_4 152 191 IPR001680 GO:0005515
Tpr5g0736 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 417 IPR001680 GO:0005515
Tpr5g0736 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 330 IPR001680 GO:0005515
Tpr5g0736 515 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 64 130 IPR022052 -
Tpr5g0736 515 Gene3D - 38 498 IPR015943 GO:0005515
Tpr5g0736 515 SUPERFAMILY WD40 repeat-like 153 484 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0736 Tpr-Chr5 12495827 12501612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0736 K10752 - gmx:100779302 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0736 5 12495827 12501612 Tpr5g0736 5 12495827 12501612 ECH