LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g0730	ATGAAAATTAAGGGTCCTATTGTGTTTCTTTCTCATCTTGTTGCCACTTTTTTTGTGGTTGCATCCGCTGGTAATTTTTACCAAGACTTTGAAATAACATGGGGTGATAGTCGTGCCAAAATTCTTGAAAATGGACAAAGTCTTAGCCTCACTTTAGATAAAGCTTCTGGCTCTGGCTTTCGTTCTAAAAATGAATATTTGTTTGGAAAAATTGATATGCAACTTAAGCTTGTGGCCGGTAACTCTGCCGGCACTGTCACCGCCTATTATCTATCTTCACTAGGGTCTACTCATGATGAAATAGACTTTGAATTTCTTGGTAACTTGAGTGGTGATCCATATATTCTTCATACAAATGTATTCACACAAGGGAAAGGAAATAGAGAGCAACAATTCTATTTGTGGTTTGATCCCACCAAGGACTTCCACACATATTCCCTTCTTTGGAATCCTCAAAGCATCATATTCTCTGTGGATGGAACACCTATAAGGGAATTCAAAAATTTAGAATCAAAAGGGGTTGATTATCCAAAGAACCAAGCCATGAGGATATATTCTAGCCTATGGAATGCTGAAAATTGGGCCACAAGAGGTGGGCTTGTGAAAACAGATTGGGCCCAAGCCCCATTCACTGCAACATATAGAAACTTCAATGCACAAGCTTGTGTTTGGACTTCTTCAGGCTCTTCTTGTTCTTCCAACAAATCTCCATCTTCATCATCATCCCAATCATGGTTAAGAGAGTCACTTGACTCAAATGGAATAGCAAAAATTCATTGGGCGCAAAAGAATTACATGATTTATAATTATTGCACCGATACTAAGCGATTCCCACAAGGTCCCCCTGTTGAATGCATCGCCTAA	864	0.3912	MKIKGPIVFLSHLVATFFVVASAGNFYQDFEITWGDSRAKILENGQSLSLTLDKASGSGFRSKNEYLFGKIDMQLKLVAGNSAGTVTAYYLSSLGSTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSLLWNPQSIIFSVDGTPIREFKNLESKGVDYPKNQAMRIYSSLWNAENWATRGGLVKTDWAQAPFTATYRNFNAQACVWTSSGSSCSSNKSPSSSSSQSWLRESLDSNGIAKIHWAQKNYMIYNYCTDTKRFPQGPPVECIA*	288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g0730	287	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	13	286	-	-
	Tpr5g0730	287	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	286	IPR013320	-
	Tpr5g0730	287	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	100	110	IPR008263	GO:0004553\|GO:0005975
	Tpr5g0730	287	Pfam	Glycosyl hydrolases family 16	27	206	IPR000757	GO:0004553\|GO:0005975
	Tpr5g0730	287	PRINTS	Glycosyl hydrolase family 16 signature	58	76	IPR008264	GO:0004553\|GO:0005975
	Tpr5g0730	287	PRINTS	Glycosyl hydrolase family 16 signature	116	129	IPR008264	GO:0004553\|GO:0005975
	Tpr5g0730	287	PRINTS	Glycosyl hydrolase family 16 signature	134	151	IPR008264	GO:0004553\|GO:0005975
	Tpr5g0730	287	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	13	286	IPR044791	GO:0004553
	Tpr5g0730	287	Gene3D	-	13	287	-	-
	Tpr5g0730	287	PIRSF	EndGlu_transf	3	287	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Tpr5g0730	287	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	241	285	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Tpr5g0730	287	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	20	214	IPR000757	GO:0004553\|GO:0005975
	Tpr5g0730	287	CDD	GH16_XET	21	285	IPR016455	GO:0010411\|GO:0016762\|GO:0042546

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g0730	Tpr-Chr5	12247289	12249905	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g0730	13	287	Glycoside Hydrolase	AT4G25810	72.000	1.86e-150	421

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g0730	K14504		K08235	gmx:100807063	469.929

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g3402	2	37532507	37534322	Tpr5g0730	5	12247289	12249905	PCT