Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0676 ATGGCAACAGAGAGTCCAATTAGAATCTCAGAAGCCGGGGGGAAATGGCCGTCACATATTGAAACTTCAGCTTTTGGCGCATCACCTCATAACATGGGGACAGAGGATTTGGGTATTCTTTTGAAGGGCCATAGGTTCCGTGGTAGTGCAAAGGATGTGGCACCCAATCGTAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTCTGGCCATAGAAAACCTATTACCACTTCAGAACACCCAGGATGCAAGCTTGACAACTCTTAGCAGAGCTGTAAAAAATTGCCAATCTGAAGAACAGTTACGAGCTGATCCAGCTTATTTGGCATATTACAGTTCCAATGTGAACCTAAACCCTAGACTTCCTCCCCCACTAACTTCCCGGGAAAACCGCCATATAGGGCATCGTACTGGTAGTTCTAGGAATAATTGGGGATTGTCTTCTGCAGAACATAGAAGTAACAGTTCCTTACATTTACCGCAAGCAACTCTTTCAACACACAAGGAGGAGTCTGAGGACGATTCACCCCAACAACAGGCATATGAAAATGAGTTAGTTAAGACAAGTGGAGTACGGCGTAGACAGGATGCAGCTTCATCGGCATCACAGCAAAAAAATGTGGTTGATTTAATTCAGGAGGATTTTCCTCGCACCATGTCACCTGTATATAATATGTCTCTTTCTGTAAGTCATGGACTCGTGGATAAACCAACTGAATTAGAAGCTGGTTCCAGTTCTTCTCATGACCCTCATGTTACTGCAGTAGAGTCTGCTAAACCTACTGCAAGTGCGGATGATATTAGGGTGTCATCAAGTGTCGATGTCCATACCCCTGTTGCAAGCTCTTCAACATTTGAATCCACAGCTAGAATGGGTTTTAGTAACTTAGATGTTGCAACTGTTGCGTCTCAATTGAAGACACTTAGTGTATCTAATCTACCCAATTCAGAAAGCCTGAGTTATGAAGAAAAATTGAAGACCAGCTACCAGAACAATATGATGCAACGGCAGGTATTCCCGCAACAAAACAATCCGTATGAAGTTCCTAGTGCCAATTCTCAAAGTGTAAACAATGCCTATGTTGGCAGGGAACAGTTTCCTCATAATTTGAGCAAGTTGTCTGATGTCCAGCCACTACTTCAGTCATCGGGGTTTACACCTCCCTTATATGCCACAGCAGCAGCTTATATGGCATCTGTAAATCCATTTTATGCTAATATGCAGGCCTCAGGCACATATGCTCCTCAATATGTTGGTGGATACACTTTAAATCCTACAGCTATTCCCCCATATATTTCTGCATACCCTCCTCATGGTGCTGTACCATTTGTTGTTGATGGAGCTACTAGTTCTAATTATACCCCGCTAACACCCGGGGTTTCGACCGGGGGTAGTATTTCACATGGAGGTGAAATAATACATGCAAACAAGTACCTTGGGCAATTTGGATATCCTGTACAGCCTTCTTTTGGTGATCCTATTTACATGCAGTATAATCAGCAACCTTTTGTGGATGGATTTGGTATTCCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTGGTGTTAACCAAATAAATCCTTATGATTCACAAAAAAGGCCTGGTACTGGGGCTTATTTGGATGATAAAAAATTACATGAACAAAGAACTGGTGCTAATATGAACTCAAGAAGAGGTGGATTATCGGTTCCTGGTTATTATGGACATATGCCAAACACAGGATTTGTAATGCAGTATCCAAGTTCACCACTTCCCAGTCCAGTTTTGTCTGGATATCCAGAAGGAAGTCCTGGCCTTTCAGGAGGTAGAAATGAAATGAAACCTTTCCCAGCTTCTGGTAGAAATGGAGGCATGTTATCTGGATGGCATGGTCCAAGGTCCTTTGAAAGTGCTCAAGACCCCAAGATTGTTAACTTCCTTGAAGAGTTGAAATCTGGCAAAGGTCGCAGATTTGAATTATCCGATATTATTGGACATATTGTTGAATTTAGTGCTGATCAGCATGGAAGTCGATTTATACAACAGAAGTTGGAAAGTTGTGGTGCTGAAGAGAAGGCATTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTCGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAACCCTGAGCAGAGGAGGGAACTTGCAGATAAACTGGCTGGTCAGATACTTCCTTTAAGTCTGCAGATGTATGGCTGTCGCGTAATCCAAAAGGCACTCGAGGTTATTGAGCATGAACAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGAAATATCATGAGATGTGTTCGTGATCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCTACCAAAAAAATTGGCTTTATACTATCTGCATTTCGTGGTCAAGTTGCTAATTTATCAATGCATCCTTATGGTTGTCGAGTCGTCCAGAGAATTCTGGAGCATTGTACAGATGAGGTTCAGTGTCAGTTCATTGTGGATGAAATCTTGGAGTCAGTTTGTTCTCTAGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAGAGAGGAAAGCCTCAAGAAAGGAGCCAAATAATCAGCAAGCTGTCAGGACATGTTTGTCAATTTAGCCAGCATAAGTTTGCTTCGAATGTTGTGGAGAAATGTCTCGAATACGGTGATGCCTCTGAACGGGAAGTGTTAATTGTAGAGATTATTGGGCCTGATGGGCAAAATGATAATTTATTGACAATGATGAAAGACCAATATGCGAATTATGTGATTCAGAAGGTTATTGATATCTGTTCTGATAATCAGCGAGCAATGTTACTCTCTCACATAAGAGTCCATGCTCATGCTTTGAAGAAATATACTTACGGAAAACACATTGTGGCTCGTTTGGAAAATCAAGTTGGAGATAATCAAACACCTAGTTCTTGA 2958 0.4189 MATESPIRISEAGGKWPSHIETSAFGASPHNMGTEDLGILLKGHRFRGSAKDVAPNRSGSAPPSMEGSFLAIENLLPLQNTQDASLTTLSRAVKNCQSEEQLRADPAYLAYYSSNVNLNPRLPPPLTSRENRHIGHRTGSSRNNWGLSSAEHRSNSSLHLPQATLSTHKEESEDDSPQQQAYENELVKTSGVRRRQDAASSASQQKNVVDLIQEDFPRTMSPVYNMSLSVSHGLVDKPTELEAGSSSSHDPHVTAVESAKPTASADDIRVSSSVDVHTPVASSSTFESTARMGFSNLDVATVASQLKTLSVSNLPNSESLSYEEKLKTSYQNNMMQRQVFPQQNNPYEVPSANSQSVNNAYVGREQFPHNLSKLSDVQPLLQSSGFTPPLYATAAAYMASVNPFYANMQASGTYAPQYVGGYTLNPTAIPPYISAYPPHGAVPFVVDGATSSNYTPLTPGVSTGGSISHGGEIIHANKYLGQFGYPVQPSFGDPIYMQYNQQPFVDGFGIPGHFDPLAPRASGVNQINPYDSQKRPGTGAYLDDKKLHEQRTGANMNSRRGGLSVPGYYGHMPNTGFVMQYPSSPLPSPVLSGYPEGSPGLSGGRNEMKPFPASGRNGGMLSGWHGPRSFESAQDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLESCGAEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGNPEQRRELADKLAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCVRDQNGNHVIQKCIESIPTKKIGFILSAFRGQVANLSMHPYGCRVVQRILEHCTDEVQCQFIVDEILESVCSLAQDQYGNYVTQHVLERGKPQERSQIISKLSGHVCQFSQHKFASNVVEKCLEYGDASEREVLIVEIIGPDGQNDNLLTMMKDQYANYVIQKVIDICSDNQRAMLLSHIRVHAHALKKYTYGKHIVARLENQVGDNQTPSS* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0676 985 MobiDBLite consensus disorder prediction 121 157 - -
Tpr5g0676 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 910 951 IPR001313 GO:0003723
Tpr5g0676 985 PANTHER PUMILIO HOMOLOG 5 45 978 - -
Tpr5g0676 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 657 692 IPR001313 GO:0003723
Tpr5g0676 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 729 764 IPR001313 GO:0003723
Tpr5g0676 985 SUPERFAMILY ARM repeat 642 974 IPR016024 -
Tpr5g0676 985 CDD Pumilio 652 973 IPR033712 GO:0003723
Tpr5g0676 985 SMART pum_5 765 800 IPR001313 GO:0003723
Tpr5g0676 985 SMART pum_5 838 873 IPR001313 GO:0003723
Tpr5g0676 985 SMART pum_5 693 728 IPR001313 GO:0003723
Tpr5g0676 985 SMART pum_5 916 951 IPR001313 GO:0003723
Tpr5g0676 985 SMART pum_5 657 692 IPR001313 GO:0003723
Tpr5g0676 985 SMART pum_5 801 837 IPR001313 GO:0003723
Tpr5g0676 985 SMART pum_5 729 764 IPR001313 GO:0003723
Tpr5g0676 985 SMART pum_5 874 909 IPR001313 GO:0003723
Tpr5g0676 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 801 837 IPR001313 GO:0003723
Tpr5g0676 985 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 978 - -
Tpr5g0676 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 838 873 IPR001313 GO:0003723
Tpr5g0676 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 765 800 IPR001313 GO:0003723
Tpr5g0676 985 MobiDBLite consensus disorder prediction 265 287 - -
Tpr5g0676 985 MobiDBLite consensus disorder prediction 186 206 - -
Tpr5g0676 985 Pfam Pumilio-family RNA binding repeat 920 953 IPR001313 GO:0003723
Tpr5g0676 985 Pfam Pumilio-family RNA binding repeat 733 766 IPR001313 GO:0003723
Tpr5g0676 985 Pfam Pumilio-family RNA binding repeat 878 912 IPR001313 GO:0003723
Tpr5g0676 985 Pfam Pumilio-family RNA binding repeat 776 791 IPR001313 GO:0003723
Tpr5g0676 985 Pfam Pumilio-family RNA binding repeat 805 840 IPR001313 GO:0003723
Tpr5g0676 985 Pfam Pumilio-family RNA binding repeat 843 875 IPR001313 GO:0003723
Tpr5g0676 985 Pfam Pumilio-family RNA binding repeat 698 730 IPR001313 GO:0003723
Tpr5g0676 985 Pfam Pumilio-family RNA binding repeat 661 695 IPR001313 GO:0003723
Tpr5g0676 985 MobiDBLite consensus disorder prediction 138 157 - -
Tpr5g0676 985 Gene3D - 638 982 IPR011989 -
Tpr5g0676 985 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 637 977 IPR033133 GO:0003723
Tpr5g0676 985 MobiDBLite consensus disorder prediction 241 287 - -
Tpr5g0676 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 874 909 IPR001313 GO:0003723
Tpr5g0676 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 693 728 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0676 Tpr-Chr5 11032865 11042097 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0676 K17943 - gmx:100780168 1603.96