Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0661 ATGGAACAACCACCTTCAGACCCTCCGGCCACCGGTGCCGGCGAAACCATCAGCAAAAATGCACTGAAGCGTGAACTCAAGAACAAACAGAGAGAAGAGGAAAAGAAGAAAAAGGAAGAAGCTAAAAAGGCTGCTGCATTGGAAAAGGCTAAAGAGAACAAGTCTGCACCACCTAATGACGAAGATATCGATCCAACGCAATACTTGAAGAATAGGCTGAATTATCTTGAAAATGAAAAGAAAGAAGGGAAAAACCCTTATCCACACAAATTCCTTGTCACTTTGTCTATTCAAGAATATATCAAGAAATATGAAAGTTTGAAAGATGGACAACACCAGGAAGATGTTTCTGTATCTTTGGCTGGTCGAATCATGCACAAACGTGCCTCTGGGGTAAAGCTTGTCTTCTATGATCTGCATGGTGGTGGTTTTAAGGTTCAGGTTATGGCTGATGCGAGTAAATCGGACTTGGATGAGGCTGAGTTTTCCAAATTCCATTCTAATGTGAAGCGTGGTGATATTGTTGGCATCACAGGGTTTCCAGGCAAAAGCAAGAAGGGAGAGCTTAGTATTTTCCCCAAAACTTTTGTGGTGCTGTCTCATTGTCTTCATATGTTGCCAAGACAAATATCCGCTCCTGCTGCTGAAAATACAAATGTGAAGAAAGATGCATGGGTACCAGGCAGTACCAGGAATCCTGAAGCATACATTTTGAAAGATCAGGAAACAAGATATCGGCTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGACAAGGTCTAGAATAATTTCTTACATTAGGAAGTTCCTGGACAATCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGTGCTACTGCTAAACCATTTACAACTCATCATAACGAGCTTAACATGGGATTATTCATGAGAATTGCTCCAGAACTCTATCTCAAGGAGTTGGTGGTTGGTGGGCTGGACCGTGTTTATGAAATTGGGAAACAATTTAGGAATGAGGGTATAGATTTGACACATAATCCAGAGTTTACTACCTGTGAGTTCTATATGGCTTATATGGACTACAATGACGTAATGGAGATAACAGAGAAAATGTTGAGTGGTATGGTCCATGAACTTACAAAAGGCAGCTATAAAATCCAGTATCATGCAGATGGGACTGATAAGGATCCTATTGAAATAGACTTTACTCCACCATTCAGAAGGATTGACATGATTGAAGGATTAGAGGAGATTGCAGGCCTCAATATTCCGAAAGACTTGGCGAGCGATGAAGCTAATCAATATCTGAGGGATGCATGCAAGAAGTATGAAATCACATGTCCCCCTCCCGAAACAACTGCTCGTTTGTTGGATAAGCTTGTGGGGCACTTTTTGGAGGAAACATGTGTCAATCCTACATTCATCATAAATCAACCTGAAATAATGAGTCCTTTGGCTAAGTGGCACAGATCCAGACCAGGCCTGACTGAACGTTTTGAATTGTTTGTTAACAAACATGAGGTTTGCAACGCGTATACTGAATTGAATGACCCTGTGGTACAAAGACAAAGATTTGCTGAGCAACTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGCTCATAGATGAAACATTTTGTACCGCTTTGGAGTATGGTTTGCCACCAACTGGTGGTTGGGGTTTGGGTATCGATCGGTTGACCATGTTATTGACCGATTCACAAAATATCAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGCTTGA 1785 0.4151 MEQPPSDPPATGAGETISKNALKRELKNKQREEEKKKKEEAKKAAALEKAKENKSAPPNDEDIDPTQYLKNRLNYLENEKKEGKNPYPHKFLVTLSIQEYIKKYESLKDGQHQEDVSVSLAGRIMHKRASGVKLVFYDLHGGGFKVQVMADASKSDLDEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMLPRQISAPAAENTNVKKDAWVPGSTRNPEAYILKDQETRYRLRHLDLMLNPEVREIFKTRSRIISYIRKFLDNLDFLEVETPMMNMIAGGATAKPFTTHHNELNMGLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDVMEITEKMLSGMVHELTKGSYKIQYHADGTDKDPIEIDFTPPFRRIDMIEGLEEIAGLNIPKDLASDEANQYLRDACKKYEITCPPPETTARLLDKLVGHFLEETCVNPTFIINQPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMLIDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQA* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0661 594 Pfam OB-fold nucleic acid binding domain 118 195 IPR004365 GO:0003676
Tpr5g0661 594 SUPERFAMILY Class II aaRS and biotin synthetases 240 591 IPR045864 -
Tpr5g0661 594 Hamap Lysine--tRNA ligase [lysS]. 71 593 IPR002313 GO:0004824|GO:0005524|GO:0006430
Tpr5g0661 594 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 262 592 IPR006195 -
Tpr5g0661 594 TIGRFAM lysS_bact: lysine--tRNA ligase 232 593 IPR002313 GO:0004824|GO:0005524|GO:0006430
Tpr5g0661 594 CDD LysRS_core 255 592 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tpr5g0661 594 PANTHER LYSINE--TRNA LIGASE 9 593 - -
Tpr5g0661 594 MobiDBLite consensus disorder prediction 20 59 - -
Tpr5g0661 594 Coils Coil 19 51 - -
Tpr5g0661 594 PANTHER LYSYL-TRNA SYNTHETASE 9 593 - -
Tpr5g0661 594 PIRSF LysRS2 9 594 IPR034762 GO:0004824|GO:0005524|GO:0006430
Tpr5g0661 594 Pfam tRNA synthetases class II (D, K and N) 240 590 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tpr5g0661 594 Gene3D Bira Bifunctional Protein; Domain 2 236 594 IPR045864 -
Tpr5g0661 594 MobiDBLite consensus disorder prediction 1 68 - -
Tpr5g0661 594 SUPERFAMILY Nucleic acid-binding proteins 63 207 IPR012340 -
Tpr5g0661 594 Gene3D - 66 208 IPR012340 -
Tpr5g0661 594 PRINTS Lysyl-tRNA synthetase signature 277 287 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tpr5g0661 594 PRINTS Lysyl-tRNA synthetase signature 293 309 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tpr5g0661 594 PRINTS Lysyl-tRNA synthetase signature 322 335 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tpr5g0661 594 PRINTS Lysyl-tRNA synthetase signature 340 357 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tpr5g0661 594 PRINTS Lysyl-tRNA synthetase signature 475 491 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Tpr5g0661 594 CDD LysRS_N 117 252 IPR044136 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0661 Tpr-Chr5 10712257 10721368 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0661 K04567 - gmx:100785660 1005.36