Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr5g0659 | ATGGAAGGTACCCTTTTCCCTAATAGACCAGTTCTACCACTTCCCACAAAAAAACCAACTCAAACATTGAAATTCAAACCAACAACATTTTCACACTCTCCACCATCACAAACACCATCATCACAAACACCACCTTCATTGCATTTAGATTCTCTTCTTAACCATCTAAAACACCTTTCTTCAACTCCTATTGTTACTCACACACAAACACTTGTTCCTCAACCCAACAATACCCATTTTTCTTCTATTGATGAAAATGTTCAAGAGGGTGGTGGTGGTTATACAAAACGACCCAGTTTGTCTTCTGTTGATTATAACCATTTTGATGATGCAAAGTTTGTTTTTTTATCTGATAAAACTAGGTTTATGTTGAATTCAATTGTTGGGTATTCTTTGAATGACTTGATTGAGTTTTTCAATTCTGTCAAATTTGAATTACTTGACTCTGATATTACTAGTTTGTTGAAGGCTTTGGATCTTTCTGGGAATTGGGAAAGAGCTTTTTTGTTGTTTGAATGGGTTTGGTTGAATTTTGGGTCTGAAAATAAGAAACTAGATGATCAATCTGTTGAACTTATTGTTAAGATATTAGGTAAAGAATCACAGTATTCAATTGCATCTAAGCTGTTTGATATAATTCCTGTTGAAGAATATTCACTTGATGTAAGGGCTTGTACTACTGTTCTTCATTCTTATGCAAGAACCGGTAAGTATAAACGTGCTATCGAAATTTTTCAGAAGATGAAAGAGACTGGTCTTGAACCTACTTTGGTTACTTATAATGTTATGCTTGGTGTTTATGGCAAAATGGGTCGGTCTTGGGATAATATTTTGGAGTTGTTGGATGAGATAAAGAGTAGAGGGCTTGAGTTTGATGATTTTACATGTAGTACTGTGATATCTGCTTGTGGGAGAGAGGGTATGCTTGATGAAGCAAGAAAGTTTTTCGATGATTTGAAATTGAATGGATATAAACCTGGAACCCCTGCATATAACTCTATGTTGCATGCTTTCGGGAAGGCTGGAGTTTATGTAGAGGCCTTGAACATCTTTAGAGAAATGGAGGCTAATAATTGTGAGCCTGATGCTATTACTTACAATGAGCTTGTGGCAGTGTATGTAAGAGCTGGGTTTCATGATGAAGCTGCTTCTGTTATTGATAGAATGGCAAGCAAAGGAGTTGTGCCGAATGCTATTACTTATACAACCGTGATAGATGCCTATGGTAAAGCGGATAACGAGGACAAGGCTTTAAAGGTGTTTGGTCAGATGAAGGAGTTGGGTTGTGTTCCTACTGTATGCACATACAATGCTGTTCTTGCAATGCTAGGCAAGAAGTCAAGATCAGAAGACATGATTAAGATTCTGTGCGACATGAAATTGAGTGGGTGTCCTCCTGACCGTGTAACGTGGAACACAATGCTTGCTGTATGTGGTGAGAAGGGTAAGCAAAAGTATGTTAACCAGGTTTTAAGGGAAATGAAAACCTGTGGATTTGAGCCTGAAAAAGACACATTCAATACATTAATTAGCGCCTATGGTCGGTGTGGGTCCGAAGTTGATGTTGCAAAAATGTACGGGGAAATGGTTTCAGCCGGCTTTACTCCATGCATAACGACTTACAATGCTCTTCTAAACGCTCTTGCTAGGCGAGGTGATTGGGAAGCGGCAGAATCCATCATTCTCGACATGAGGAACAAGGGCTTTAAGCCGAACGAAACTTCGTACTCGCTTTTGCTTCACTGTTATTCTAAAGCTGGGAATGTCAGGGGGATAGAGAACGTTGAAAATGAAATTTACGATGGTCACGTCTTTCCTAGTTGGACACTTTTGAGAACCCTTGTCCTTACATACTACAAGTGCAGACAGCTTCGGGGAATGGTAAGGGCATTTGATCAGTTGCAAAAGAATGGATACAAACTTGATATGGTTGTAATCAATTCCATGCTTTCGTTGTTTGTCCAAAACAAGAAGCTCGAGAAGGCACATGAAATGCTAGATCTTATTCGCAATAGTGGGTTGCAGCCGGATCTTGTGACCTATAATAGCTTAATAGATTTGTATGCTCGTGTCGGTGATTGTTGGAAAGCAGAAGAAATGCTCAAGGAAATTCAAAACTCCGGTCTGACTCCAGATGTCGTGTCTTACAATACGGTCATCAAGGGATTTTGTAAAAAAGGGCTCATGCAAGAGGCCATCAGAATTCTTTCGGAGATGACTAAAAATGGAATTCAACCATGTCCTATTACATTCAATACTTTCTTGTCATGCTATGCAAAGAAGGGTCTTTTTGCTGAAGCAGATGAAGTCATTAGATATATGATTGGACACGGTTGCATGCCAAATGAGTTATCTTACAAGATTGTAATTGATGGTTATATTAAAGAGAAAAAGCATAAAGAAGCAATGGACTTTGTGTTTAAGATTAAGGAGATCGATATCTCTTTTGATGATCAATCTTTGAAAAAGCTAGCTTCTTATATTAGGGAGAGTTTGGGGACTTAA | 2505 | 0.3848 | MEGTLFPNRPVLPLPTKKPTQTLKFKPTTFSHSPPSQTPSSQTPPSLHLDSLLNHLKHLSSTPIVTHTQTLVPQPNNTHFSSIDENVQEGGGGYTKRPSLSSVDYNHFDDAKFVFLSDKTRFMLNSIVGYSLNDLIEFFNSVKFELLDSDITSLLKALDLSGNWERAFLLFEWVWLNFGSENKKLDDQSVELIVKILGKESQYSIASKLFDIIPVEEYSLDVRACTTVLHSYARTGKYKRAIEIFQKMKETGLEPTLVTYNVMLGVYGKMGRSWDNILELLDEIKSRGLEFDDFTCSTVISACGREGMLDEARKFFDDLKLNGYKPGTPAYNSMLHAFGKAGVYVEALNIFREMEANNCEPDAITYNELVAVYVRAGFHDEAASVIDRMASKGVVPNAITYTTVIDAYGKADNEDKALKVFGQMKELGCVPTVCTYNAVLAMLGKKSRSEDMIKILCDMKLSGCPPDRVTWNTMLAVCGEKGKQKYVNQVLREMKTCGFEPEKDTFNTLISAYGRCGSEVDVAKMYGEMVSAGFTPCITTYNALLNALARRGDWEAAESIILDMRNKGFKPNETSYSLLLHCYSKAGNVRGIENVENEIYDGHVFPSWTLLRTLVLTYYKCRQLRGMVRAFDQLQKNGYKLDMVVINSMLSLFVQNKKLEKAHEMLDLIRNSGLQPDLVTYNSLIDLYARVGDCWKAEEMLKEIQNSGLTPDVVSYNTVIKGFCKKGLMQEAIRILSEMTKNGIQPCPITFNTFLSCYAKKGLFAEADEVIRYMIGHGCMPNELSYKIVIDGYIKEKKHKEAMDFVFKIKEIDISFDDQSLKKLASYIRESLGT* | 835 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 747 | 781 | IPR002885 | - | |
| Tpr5g0659 | 834 | SUPERFAMILY | HCP-like | 234 | 429 | - | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 642 | 676 | IPR002885 | - | |
| Tpr5g0659 | 834 | Pfam | PPR repeat family | 711 | 755 | IPR002885 | - | |
| Tpr5g0659 | 834 | Pfam | PPR repeat family | 326 | 367 | IPR002885 | - | |
| Tpr5g0659 | 834 | Pfam | PPR repeat family | 536 | 584 | IPR002885 | - | |
| Tpr5g0659 | 834 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 256 | 291 | IPR002885 | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 537 | 571 | IPR002885 | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 397 | 431 | IPR002885 | - | |
| Tpr5g0659 | 834 | PANTHER | - | 1 | 830 | - | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 258 | 292 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 644 | 677 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 714 | 746 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 399 | 433 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 294 | 327 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 224 | 256 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 330 | 363 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 540 | 573 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 469 | 501 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 434 | 467 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 364 | 398 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 679 | 713 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 749 | 783 | IPR002885 | - | |
| Tpr5g0659 | 834 | TIGRFAM | PPR: pentatricopeptide repeat domain | 505 | 536 | IPR002885 | - | |
| Tpr5g0659 | 834 | Pfam | PPR repeat | 785 | 812 | IPR002885 | - | |
| Tpr5g0659 | 834 | Pfam | PPR repeat | 294 | 323 | IPR002885 | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 327 | 361 | IPR002885 | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 292 | 326 | IPR002885 | - | |
| Tpr5g0659 | 834 | Pfam | Pentatricopeptide repeat domain | 454 | 514 | IPR002885 | - | |
| Tpr5g0659 | 834 | Pfam | Pentatricopeptide repeat domain | 385 | 445 | IPR002885 | - | |
| Tpr5g0659 | 834 | Pfam | Pentatricopeptide repeat domain | 220 | 270 | IPR002885 | - | |
| Tpr5g0659 | 834 | Pfam | Pentatricopeptide repeat domain | 631 | 688 | IPR002885 | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 502 | 536 | IPR002885 | - | |
| Tpr5g0659 | 834 | PANTHER | OS03G0856100 PROTEIN | 1 | 830 | - | - | |
| Tpr5g0659 | 834 | Gene3D | Tetratricopeptide repeat domain | 390 | 461 | IPR011990 | GO:0005515 | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 432 | 466 | IPR002885 | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 712 | 746 | IPR002885 | - | |
| Tpr5g0659 | 834 | Gene3D | Tetratricopeptide repeat domain | 609 | 712 | IPR011990 | GO:0005515 | |
| Tpr5g0659 | 834 | Gene3D | Tetratricopeptide repeat domain | 485 | 601 | IPR011990 | GO:0005515 | |
| Tpr5g0659 | 834 | Gene3D | Tetratricopeptide repeat domain | 273 | 389 | IPR011990 | GO:0005515 | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 467 | 501 | IPR002885 | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 677 | 711 | IPR002885 | - | |
| Tpr5g0659 | 834 | Gene3D | Tetratricopeptide repeat domain | 713 | 830 | IPR011990 | GO:0005515 | |
| Tpr5g0659 | 834 | Gene3D | Tetratricopeptide repeat domain | 128 | 272 | IPR011990 | GO:0005515 | |
| Tpr5g0659 | 834 | MobiDBLite | consensus disorder prediction | 21 | 46 | - | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 362 | 396 | IPR002885 | - | |
| Tpr5g0659 | 834 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 221 | 255 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr5g0659 | 208 | 811 | Glycosyltransferase | AT1G05670 | 22.772 | 3.37e-49 | 184 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr5g0659 | K17710 | - | gmx:100803889 | 1196.42 |