Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0608 ATGGCAGCATCATTGGCATGCCTTTTTGGGAGTGGTTTATCTACACAGACTAATAAAATAATTCTTGGCAAGGACGTAAATGGAAGACATCCCGTATTTTCTCGTAGACATTCATCATTGAGGAGGGAATTGAAAACAATATTAGTAAAAGCATCGTTAGATCAAAGGGAACATGAAGGGAGAAGAGGATTTCTGAAATTGTTAAATGTGACAGTTGGCTTACCGGCATTATTAGGAAGCGCCAAAGCTTATGCTGATGAACAAGGGGTTTCCTCCTCCAAAATGTCTTATTCTAGGTTTCTTGAGTTTTTGGAGAAGGACCGGGTTAAAAAAGTTGATCTGTTTGACAATGGAACTATAGCTATTGTAGAGGCTGTTTCTCCCGAGTTAGGTAATAGGGTGCAGCGAGTGCGAGTTCAACTTCCTGGACTTAGCCAAGAACTCCTTAAAAAATTCAGGGAAAAGAACATCGACTTTGCAGCTCATAATGCACAAGAAGAGTCAGATTCCTTCTTTGCAAACCTGATTGGAAATCTGGCTTTCCCTCTAATTGTGATCGGAGGATTGTTCCTTCTCTCACGACGGTCATCTGGAGGGTCGGGGGGTCCCGGCGGGTCTGGCTTTCCTTTTTCTGTTGGTCAATCAAAAGCCAAATTTCAAATGGAACCAAATACTGGAGTGACATTTGATGATGTTGCTGGGGTAGATGAAGCCAAACAGGATTTTATGGAGGTAGTCGAGTTTCTGAAAAAGCCTGAGAGGTTCACTACTATCGGGGCTCGCATACCAAAAGGAGTTCTTCTTGTTGGTCCCCCAGGGACTGGTAAGACGCTATTAGCCAAGGCTATTGCGGGTGAAGCAGGTGTCCCGTTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCTTCTCGAGTTCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCTTGTATTGTTTTTGTTGATGAAATTGATGCTGTGGGAAGGCAACGAGGCACTGGAATTGGTGGAGGGAACGATGAAAGGGAACAGACCCTTAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATTCCGGGGTCATTGTCATTGCAGCAACCAACAGGGCCGACATTCTTGACTCTGCTTTATTGAGACCGGGGCGGTTTGATAGACAGGTATCAGTCGACGTTCCGGACATTCGGGGAAGGACTGAAATACTTAAGGTTCATGGTAGTAATAAAAAATTTGATGCTGATGTTTCTCTTGAGGTAGTTGCAATGAGAACACCTGGCTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGGTTGAAATTTCATCAAAAGAGATTGATGATTCTATTGATAGGATTGTAGCTGGAATGGAAGGAACAGTGATGACAGATGGAAAGAGCAAAAATTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGACTCCTGGCCACGATCCTGTACAAAAGGTAACTCTAGTTCCACGTGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCTTCTGAAGACCCAACTCTAATCTCCAAACAACAGCTCTTTGCAAGAATTGTTGGGGGACTCGGCGGCAGAGCAGCTGAGGAAATTATTTTTGGTGAGCCTGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATAACCAGTTTGGCTAAACAGATGGTAGTGACATTCGGTATGTCAGATATTGGTCCTTGGTCACTTATGGACGGGTCAGCTCAAAATGGAGATGTCATAATGAGAATGATGGCAAGAAATTCAATGTCCGAAAAACTTGCTGAAGACATTGATTCTGCTATCAAGAGGATCTCAGATGAAGCATATGAAATTGCATTGAAGCATATTAGAAACAACCGTGAGGCCATCGATAAGATCGTGGAAGTCCTACTGGAGAAGGAGACAATCACCGGAGACGAATTCAGAGTTCTCCTTTCAGAGTTTGTTGAAATTCCACCCGAAAATGTGGTCTCTCCTTCAACTCCCTCACCGGTTGCTGTTTGA 2079 0.4377 MAASLACLFGSGLSTQTNKIILGKDVNGRHPVFSRRHSSLRRELKTILVKASLDQREHEGRRGFLKLLNVTVGLPALLGSAKAYADEQGVSSSKMSYSRFLEFLEKDRVKKVDLFDNGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLKKFREKNIDFAAHNAQEESDSFFANLIGNLAFPLIVIGGLFLLSRRSSGGSGGPGGSGFPFSVGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTTIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNSGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDIRGRTEILKVHGSNKKFDADVSLEVVAMRTPGFSGADLANLLNEAAILAGRRGKVEISSKEIDDSIDRIVAGMEGTVMTDGKSKNLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSEDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITSLAKQMVVTFGMSDIGPWSLMDGSAQNGDVIMRMMARNSMSEKLAEDIDSAIKRISDEAYEIALKHIRNNREAIDKIVEVLLEKETITGDEFRVLLSEFVEIPPENVVSPSTPSPVAV* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0608 692 Gene3D - 400 478 - -
Tpr5g0608 692 SUPERFAMILY FtsH protease domain-like 481 680 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr5g0608 692 Gene3D - 217 399 IPR027417 -
Tpr5g0608 692 SMART AAA_5 262 401 IPR003593 -
Tpr5g0608 692 CDD AAA 241 398 - -
Tpr5g0608 692 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 19 680 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tpr5g0608 692 Pfam Peptidase family M41 480 667 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr5g0608 692 Gene3D Peptidase M41 479 675 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr5g0608 692 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 175 670 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tpr5g0608 692 Gene3D - 89 173 - -
Tpr5g0608 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 469 IPR027417 -
Tpr5g0608 692 Pfam AAA+ lid domain 421 464 IPR041569 -
Tpr5g0608 692 Pfam ATPase family associated with various cellular activities (AAA) 266 397 IPR003959 GO:0005524|GO:0016887
Tpr5g0608 692 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 4 682 - -
Tpr5g0608 692 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Tpr5g0608 692 PANTHER METALLOPROTEASE M41 FTSH 4 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0608 Tpr-Chr5 9392922 9397586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0608 220 670 Miscellaneous Gene Families AT5G53170 49.559 2.87e-136 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0608 K03798 - gmx:100795567 1117.06