Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0585 ATGACAAGAAAATCTCTTGTGATTTTTTCTTTGTTTCTTGAGGTTGTTTGTTTCATTGTAATTGGTGTTCATGGTGAGAAGAATGAACCTATTGGCAAAATTTCTGGTGAAAGTTATCATGAAACAATAGATAGATTGAAATCTTTTAGGAAATCTTTAACAAGACATGATTCCATTGCTTCAACACCTTCATCTTCTTTCTCATCTCCTCCTTCTCCTCAACCAAATGAGGGTATGAATAATCCAAGAGTAATCCAAGTGACATCCTATGGTGCAGACCCAACAGGAAATTCAGATAGCACTGATGCACTACTTGCAGCCATGGCAGATGCAGCAATGCCATCAAATGATCTAAAAGAAGGACATTTGCTGGAAGGCATAAAAGACCTTGGAGGTGCACAAATTAATCTTGAAGGTGGAAATTACATGATCAGTAGGTCATTAATGTTTCCGGTAGCCGGCGTTGGAAACCTCATGATACATGGAGGAACAATAAAAGCCTCAGATGATTTTCCTAATAATGGCTACATTATTGATTTATCAAATATTTCACCTTCATCAGCCTACAATTTTGAGTACATAACTTTCAAGGATCTCTTATTAGATTCAAACTATAGAGGAGGGGGTATTTCTGTCATTAACTCACTCAGAACAAACATAGACAATTGTTACATTACACATTTCAACACAAATGGAATTTTAGTCCAAAGTGGCCATGAAACATACATAAGAAACACTTTCCTTGGCCAACACATAACCGCCGGAGGAGATAAAAACGAAAGGGATTTCTCAGGAACAGCAATAAATCTCCAAGGTAACGATAACGCTGTCACCGATGTTGTAATTTTCTCGGCTAATATAGGAATTATGGTAACTGGTCAAGCCAACACATTTTCTGGTGTACATTGTTACAATAAGGCCACAGGATTCGGCGGTACTGGAATTTACTTAAAATTACCTGGTTTAACGCAAACAAGGATCGTGAATTCGTACATGGATTATACGAGTATTGTTGCCGAAGATCCTGTTCAACTTCATATTTCTAGTAGCTTCTTCCTTGGTGATGCTAATATTGTGTTGAAATCTATGAAAGGTGTATTAGATGGTGTTACTATTGTTGATAACATGTTTTCCGGATCGGATACCGGTGTTGAAATTGTTCATTTGGATAAATCTAATAGTCCTTTTCAACAGATTAAACAAGTTTTTGTTGATAGGAACATTGCTAGAGGGATGAATCTAAAAGCAACGGTTGCGAAAAGTTCTATGCAAGGGAATGGAACTTTATGGAATGTTGATTTTAATAACATTCTTCTTTTTCCTAATCTTATTCAAAATGTTCAATACTCATTGAGTTCAAATGGTAGCAGTTTTCCTAATCATGTTCTTAGGACTGTGTCGGATAATCGCGTTGTGATTGAAACAAATGAAGCTGTTTCTGCGAATGTTTTTGTCGCGGTTGATCAAAGTGTGTCAAGTTGA 1482 0.3657 MTRKSLVIFSLFLEVVCFIVIGVHGEKNEPIGKISGESYHETIDRLKSFRKSLTRHDSIASTPSSSFSSPPSPQPNEGMNNPRVIQVTSYGADPTGNSDSTDALLAAMADAAMPSNDLKEGHLLEGIKDLGGAQINLEGGNYMISRSLMFPVAGVGNLMIHGGTIKASDDFPNNGYIIDLSNISPSSAYNFEYITFKDLLLDSNYRGGGISVINSLRTNIDNCYITHFNTNGILVQSGHETYIRNTFLGQHITAGGDKNERDFSGTAINLQGNDNAVTDVVIFSANIGIMVTGQANTFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSMKGVLDGVTIVDNMFSGSDTGVEIVHLDKSNSPFQQIKQVFVDRNIARGMNLKATVAKSSMQGNGTLWNVDFNNILLFPNLIQNVQYSLSSNGSSFPNHVLRTVSDNRVVIETNEAVSANVFVAVDQSVSS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0585 493 Gene3D - 84 493 IPR012334 -
Tpr5g0585 493 MobiDBLite consensus disorder prediction 54 82 - -
Tpr5g0585 493 Pfam Pectate lyase superfamily protein 85 309 IPR024535 -
Tpr5g0585 493 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 8 493 - -
Tpr5g0585 493 SUPERFAMILY Pectin lyase-like 83 462 IPR011050 -
Tpr5g0585 493 MobiDBLite consensus disorder prediction 55 82 - -
Tpr5g0585 493 SMART pbh1 215 237 IPR006626 -
Tpr5g0585 493 SMART pbh1 155 180 IPR006626 -
Tpr5g0585 493 SMART pbh1 272 293 IPR006626 -
Tpr5g0585 493 SMART pbh1 367 388 IPR006626 -
Tpr5g0585 493 PANTHER POLYGALACTURONASE QRT3 8 493 IPR039279 GO:0004650
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0585 Tpr-Chr5 9071913 9074969 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0585 - - gmx:100804107 721.079