Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0571 ATGAAACTCTGCATGTTTTATGTCTTGTTCATTTTTCTAAGCTATGTTCATGTTCAAGGTCGTTTTGTTGTGGAGAAAAACAGCATCACTGTTCTATCACCACATAAAATAAGAGGTAAAAAAGATGGTGCCATAGGAAACTTTGGTCTACCAAATTATGGAGGATATATTGTAGGATCACTTGTTTATCCACAAAAAGGCTCTCATGGTTGTGAAGATTTTGAAGGTGATAAGCCTTTCAAGTTTCGATCTTATCGTCCAACTATTGTTCTTCTTGATCGTGGAGACTGTTATTTTGCCTTAAAGGTATGGCATGCTCAACAAGCTGGAGCTGCAGCAGTTTTAGTAGCAGACAGCATTGATGAGACACTGATAACAATGGATTCACCCGAGGAGAGCACTGATGCCGACGGCTACATAGAGAAGATTGTAATTCCATCAGCTCTAATAGACAAATCCTTTGGTGATTCATTAAAGGACTCATTAAACAACAAAGATGAAGTTTTGCTAAGAATAGATTGGAGGGAATCAGTACCTCACCCTGATAATCGAGTCGAGTACGAGTTCTGGACCAACAGCAATGACGAATGTGGTGCTCGTTGCGATGAACAGATGAATTTTGTGAAGAATTTCAAAGGTCATGCTCAGATTCTTGAGAGAGGCGGATATACATTGTTCACTCCGCATTATATAACATGGTTTTGTCCACAGCCATTTGTTGAAAGTAGTCAATGCAAGTCTCAATGTATAAATCGCGGAAGATATTGCGCGCCGGATCCAGAGAAAGATTTTGGTGAAGGATATGAAGGGAAGGATGTAGTTTATGAGAATTTGAGGCAGCTTTGTGTCCATAGAGTAGCAAACGAGAGTAACCGTTCGTGGGTCTGGTGGGATTATGTAACTGATTTTCATGTTAGATGTTCTATGAAGGAGAAAAAATACAGCAAAGATTGTGCTGAAGATGTCATGAAATCATTAGATCTTCCGATCGAGAAAATTAAGAAATGTATCGGTGATCCTGAAGCTGATGTAGAGAATGAAGTGCTAAAGATTGAACAAACAGCACAGATTGGAGGAGGATCTCGTGGCGACGTCACCATTTTGCCAACATTGGTCTTAAACAATGTCCAGTATAGAGGAAAATTGGAGAGAACATCTGTCTTGAAGGCTATATGTGCTGGATTTAAGGAGACTACTGAACCTCAAGTTTGTTTAAGTGGAGATATTGAAACTAATGAGTGTCTCGAAAGAAATGGTGGATGCTGGCAAGATAGAAGTGCTAATGTAACTGCTTGCAAGGATACTTTTAGGGGAAGAGTTTGTGAGTGTCCTATTGTGAAGGGAGTTCAGTATAAGGGTGATGGTTATACAACATGTGAAGCTTTTGGACCTGCAAGATGTGCTTTAAACAATGGAGGTTGTTGGTCAGAAACTAGAAATAAGATAACTTTCTCGGCTTGCTCAGAATCCAAGGTAAATGGCTGCCACTGTCCAGTTGGATTTCTTGGAGATGGCAACAAATGTGACGATGTTGATGAATGTAAGGAAAGAAGTGCTTGTCAGTGTGATGGTTGCAGCTGTAAGAACACTTGGGGTAGTTATGATTGTAAGTGCAAAGGAAATCTTCTATATATCAAGGAACAAGATATTTGTATTGAAAGAAGTGGATCAAAATTTGGAAAGGTCATCGCCTTTGTGGTCATAGCAGTTGTTGTCGGAGCTGGTCTAGCCGGTTACGTATTCTACAAATATAGACTCCGGTCTTACATGGATTCTGAGATTATGGCTATCATGTCACAATACATGCCACTGGACCAGCAAAATAATGTAGTTCACGCTGAATCTGAGCCTTTACGACAACAAGGAACGGTGTAA 1875 0.4 MKLCMFYVLFIFLSYVHVQGRFVVEKNSITVLSPHKIRGKKDGAIGNFGLPNYGGYIVGSLVYPQKGSHGCEDFEGDKPFKFRSYRPTIVLLDRGDCYFALKVWHAQQAGAAAVLVADSIDETLITMDSPEESTDADGYIEKIVIPSALIDKSFGDSLKDSLNNKDEVLLRIDWRESVPHPDNRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPQPFVESSQCKSQCINRGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHVRCSMKEKKYSKDCAEDVMKSLDLPIEKIKKCIGDPEADVENEVLKIEQTAQIGGGSRGDVTILPTLVLNNVQYRGKLERTSVLKAICAGFKETTEPQVCLSGDIETNECLERNGGCWQDRSANVTACKDTFRGRVCECPIVKGVQYKGDGYTTCEAFGPARCALNNGGCWSETRNKITFSACSESKVNGCHCPVGFLGDGNKCDDVDECKERSACQCDGCSCKNTWGSYDCKCKGNLLYIKEQDICIERSGSKFGKVIAFVVIAVVVGAGLAGYVFYKYRLRSYMDSEIMAIMSQYMPLDQQNNVVHAESEPLRQQGTV* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0571 624 Gene3D Laminin 404 460 - -
Tpr5g0571 624 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 7 600 - -
Tpr5g0571 624 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 7 600 - -
Tpr5g0571 624 SUPERFAMILY PA domain 46 168 IPR046450 -
Tpr5g0571 624 SMART egfca_6 510 552 IPR001881 GO:0005509
Tpr5g0571 624 ProSitePatterns Calcium-binding EGF-like domain signature. 510 536 IPR018097 GO:0005509
Tpr5g0571 624 Pfam PA domain 59 158 IPR003137 -
Tpr5g0571 624 Gene3D Laminin 465 552 - -
Tpr5g0571 624 CDD EGF_CA 510 539 - -
Tpr5g0571 624 Gene3D - 19 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0571 Tpr-Chr5 8767591 8773817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0571 8 621 Miscellaneous Gene Families AT1G30900 70.942 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0571 - - gmx:100790467 1157.13