Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0562 ATGCCACCAGCACGAGAGCTTCCGGGGTTCTACTTTGACCCAGAGAAGAACAGGTATTTTCCGATCAAAGGTCCCATTCCTGGCTCTTCTTCTTCTAAAACCAAAATCACCACTCCAAACCCTTCCCAAACCTCTTCCTCTCAGGAAAAGAATAGAAGTTCTTGTAGGAAGCTTAGAAACAGAACGTCTAAACTGCTTCAGATTAGAGAGTTAGATGGTCGTCATGTTAATGCTTCACACTATTGCAAGTGTAACTTCACGGAGGAATTTCGGAAAATACAAACATCTCAACCTAATGTTTGGAAGTATCAGGGAACTGATAGGATAGGTATTAGTGCTTTGGAACATTTAAATGTTGATGTGCAGACAGTAGATGGTAGATTTCGAACTGATGTTTTATTGAATGGAAGCATAAATGGATCACTGAGTTTTTCTGAAGTTGGAAGGATTGGGCATAATTTTGATGATGGGGTAAAGTGGATGCCAGATTGTGTGAAGAGTCATATTAAAGGGGATACAAATGTGCATAACGAGGTGCCAGGGCCGCTTTTCAGACCTAATGGAGCTTCACTGATTATGTCGTCCAGAATATCTTGTATAAGATTGGGTCCAAATTTATCCCCTCATGCTCCAAATGATAGTCCAATTGTTGGAAATGTGTTATTTACTACACTGGGATCAGAAACATCAGGTGGATCTGTTTATACCCTCAGTCTTGTTGAGCCAATAGATCTTGGACAAGGAATACTTAATACATGGAGTCGACTAGAGGAAATAACTTCTTTCAAGTGTACCCTTTGGACAGCTGAGTATGACTATAACCGACATCGGGCTATAATTGGTACTAATCAGGGAGGTGTTTCGGTGGATCTGGAAAGTGGGACAAGGTCATGGTTTTTACGTTGTAAAAGTGATGTTTTTGCACAACAGATTGTTGATTCAGGAAATGTGATTTTATGTGGACTCAGAAATGGGGCAGTTATTTCTGTAGATTTTCGAGAGAAAAGATTGCTTTCTAGTAGACTTACCTTGCATAGGATACCACACACATCTTCCGAAAAGAAAGCTGGAAATTCTAACAAAGATTGGTTTAAGCTTGAAGGAAGCATCTATCCTTCGCATACCATTAAGATGCCTTCATCTATATCCTGTTTGGCATCGCTTAAGTTTGACGATCAGTACTTCTTGGCAAGCTCCATGGATGGATCGATAAAGCTATATGACCGTCGCATGCTCCAGAGGGGTGCTGTTCAATCATATGAAGGACACGTGAATTCCCATACTCAAATACAACTCGGTGTTGACCCAGATGAAAGATATGTTATGTCAGGTGGAGAGGATTGCAAGCTACGGATATGGAGTATCAAGTCTGGCGAATTGCTTTTGGAGGATAAGTTCTCTAATTCAGTTCTCTCCACCGTATGCTATCAAACATTTAAAAGTAAATTTGAAGCAGAGGAAGAAACTCAATACACACACAACTCTTCGGGTGCATGGCTTGGATCACATGAAGGGCTATTTTATATGCGCTGGTTATGA 1539 0.4068 MPPARELPGFYFDPEKNRYFPIKGPIPGSSSSKTKITTPNPSQTSSSQEKNRSSCRKLRNRTSKLLQIRELDGRHVNASHYCKCNFTEEFRKIQTSQPNVWKYQGTDRIGISALEHLNVDVQTVDGRFRTDVLLNGSINGSLSFSEVGRIGHNFDDGVKWMPDCVKSHIKGDTNVHNEVPGPLFRPNGASLIMSSRISCIRLGPNLSPHAPNDSPIVGNVLFTTLGSETSGGSVYTLSLVEPIDLGQGILNTWSRLEEITSFKCTLWTAEYDYNRHRAIIGTNQGGVSVDLESGTRSWFLRCKSDVFAQQIVDSGNVILCGLRNGAVISVDFREKRLLSSRLTLHRIPHTSSEKKAGNSNKDWFKLEGSIYPSHTIKMPSSISCLASLKFDDQYFLASSMDGSIKLYDRRMLQRGAVQSYEGHVNSHTQIQLGVDPDERYVMSGGEDCKLRIWSIKSGELLLEDKFSNSVLSTVCYQTFKSKFEAEEETQYTHNSSGAWLGSHEGLFYMRWL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0562 512 SUPERFAMILY WD40 repeat-like 253 473 IPR036322 GO:0005515
Tpr5g0562 512 MobiDBLite consensus disorder prediction 27 51 - -
Tpr5g0562 512 Pfam WD domain, G-beta repeat 373 408 IPR001680 GO:0005515
Tpr5g0562 512 Pfam WD domain, G-beta repeat 417 454 IPR001680 GO:0005515
Tpr5g0562 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 463 IPR001680 GO:0005515
Tpr5g0562 512 Gene3D - 252 506 IPR015943 GO:0005515
Tpr5g0562 512 PANTHER KATANIN P80 SUBUNIT 12 510 - -
Tpr5g0562 512 SMART WD40_4 413 454 IPR001680 GO:0005515
Tpr5g0562 512 SMART WD40_4 369 408 IPR001680 GO:0005515
Tpr5g0562 512 MobiDBLite consensus disorder prediction 21 59 - -
Tpr5g0562 512 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 510 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0562 393 465 Miscellaneous Gene Families AT5G08390 32.877 3.71e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0562 K11799 - gmx:100798753 743.806