Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0556 ATGTCTAAATCTTTCATTTTACATCCCCAAATTACCCTCACATTTATCTTCTATTTACTAATCTTATCCCCAAAACCATCTTCCTCTCTAAACATCACCGCTCTCCTCTCCACTTACCCCGACTTATCTCAATTCACCGCCCTTCTCTCCGCCGCAACTTCCCTAACCGCCGATCTCTCCCACCGTAATTCCCTCTCTCTCCTCGCCGTACCTAACTCATTTCTCTCAACTGACCCCAATCTCTCCCACCACCAACTCTCCTCCTCCGCTCTCACCGACATCCTCCGCTACCACGTCCTCCTCCAATTCTTCTCATGGTCCGACCTCCACTCCCTCCCTCCCTCCGGTAAACTCGTCACCACTCTCTTCCAAACCACCGGTCGCGCCACCAATAATTTCGGTTCCGTTAACATCACTCACGATCCTCACTCTAATCTCGTTTCGATCCATTCACCTGCACCTTATTCTTCTTCAAACGCAACCCTAATTTCACAAATCAAAACCCTACCTTACAACGTCACAATCTTCACCGTTAATTCTCTCTTAATCCCTTACGGTTTCGATCTAATGGCATCGGAAACTCGACCGAGTATTCGTCTTAACATTAGTAAAACATTACTTGATGCTCATAATTTCAATATCATTTCTTCAATGCTTTCTGCTTCTGGTGTTGTTAATGAAATCGAAGCCGGTGAAGGTGGTTCCGGTATCACGTTATTTGTTCCGGTAGATAAGGCTTTCGCTGAATTACCTTCTTCAGTTGCACTTCAATCACTTGCGGCGGCTGAGAAAATCGTTGTTCTCAAAGCTCATGTTCTTCGTGCTTATTACCCTCTCGGTTCACTTCAATCCACTGCAAATCCATTACAACCTACTCTTGCCACGGAATCAATGGGCGCCGGAAGTTTCACGTTGAACATTTCGACGTTTAATGGCTCGGTTGCAATTAACACCGGCATTGTTCAGGGAGTAATTACTCAAACTGTTTTTGATCAGAATCCAATTGCTATTTTTGGTGTTAATAAAGTTTTATTGCCAAGAGAGATTTTTGGGAAGAATCCAATGGAATCCCCTGTTGACATTGCTGCTCCACCTCCCTATTATGATGCTAGTTCGCCGTCCGTGTTAGGCCAAGATTTGAGCTCAAATGTTGCTAGTGTTTATTGCTCCGAGTTCTTTGTTTTTGTTCTTTGTTGTATAAATTTGTATTTAATCATATAG 1221 0.4382 MSKSFILHPQITLTFIFYLLILSPKPSSSLNITALLSTYPDLSQFTALLSAATSLTADLSHRNSLSLLAVPNSFLSTDPNLSHHQLSSSALTDILRYHVLLQFFSWSDLHSLPPSGKLVTTLFQTTGRATNNFGSVNITHDPHSNLVSIHSPAPYSSSNATLISQIKTLPYNVTIFTVNSLLIPYGFDLMASETRPSIRLNISKTLLDAHNFNIISSMLSASGVVNEIEAGEGGSGITLFVPVDKAFAELPSSVALQSLAAAEKIVVLKAHVLRAYYPLGSLQSTANPLQPTLATESMGAGSFTLNISTFNGSVAINTGIVQGVITQTVFDQNPIAIFGVNKVLLPREIFGKNPMESPVDIAAPPPYYDASSPSVLGQDLSSNVASVYCSEFFVFVLCCINLYLII* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0556 406 Pfam Fasciclin domain 211 346 IPR000782 -
Tpr5g0556 406 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10 403 IPR033254 -
Tpr5g0556 406 ProSiteProfiles FAS1/BIgH3 domain profile. 29 182 IPR000782 -
Tpr5g0556 406 SUPERFAMILY FAS1 domain 206 346 IPR036378 -
Tpr5g0556 406 Gene3D FAS1 domain 190 347 IPR036378 -
Tpr5g0556 406 Gene3D FAS1 domain 23 184 IPR036378 -
Tpr5g0556 406 ProSiteProfiles FAS1/BIgH3 domain profile. 199 344 IPR000782 -
Tpr5g0556 406 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 10 403 - -
Tpr5g0556 406 SMART fasc_3 238 347 IPR000782 -
Tpr5g0556 406 SUPERFAMILY FAS1 domain 28 185 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0556 Tpr-Chr5 8484910 8486500 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0556 - - ccaj:109812902 513.072