Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0253 ATGAGGTCTTCTTATTCTTCTTCTTCTTCTTCGGGTGCGATCAACGTCGCTATGAGTGCTCAGAAGCTTGAAGTCGATAATCGGATTTCTCTTCGGTTCTATTATCGGATTGCTGATAATATACTTCGACAGGCCGACATTTTTCGTGCAGAGAAGAACATTATTGACCTATATGTCATGCTTTTAAGATTTTCTAGTTTGGCATCTGAGACAATACCGCGTCACCGGGAGTATAGATCATCTCCACAAAGCAAGAAACAATCATTGAAAAAGGGATTGTTGATTTCTTTGAATGAACTGGAGACGTTGAAACCGTTGGTCCAGCAGAAGATCAATGAGCTTAACAGCAAAATTGCTCACCAACAAAATGGACGGGGAAATTTTCATTCAAATAATTCAGTGGATTTTTCTCCTGTGAGAAAGCAAACTTTGGCTAGTAATAATGGACAAATAAAGGCAGTCAGAGCAACTGCCAAGGAGTATGTTTACCAAGGATCAAGTGGCCAACAGTTCTCTTATGTCAGGCCTGTGGAAGAGCAAGTACGAAGACTATCTCTAACTCTGCCACCTCCAAAATTGGAAACTCTCTCTAGACATTCTATCCTTGGTCCCAATGGGCTTAATGGGCAGTGGCGGCCACCTACTATTAATACAGGGGTCAGGTATCCAACTAACATAGATCTCTCTCCAGTTGAACTACCAAGCTTACGGCCTCCCTTAGAAGATGTATCTCTGAGTAATAAAGATAATAGCATTGCGGAACTCCATAAATTAGATTTAAATTCAATTCCTACCGATAGTGAAGACAGACAGCCCCAGCGGACTCAGGAATCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAACCTCTGATCGAATAGAAGTTATCAGACAACCTTCTCCTCCACCCGTACTTGCTGAAGTGCAAGATTTGGTTCCTGCAGTGTCACCTCACATTAATGAGGGAGGATGTAAGACAGAGATTCCATCATCTGACAGTTGTGTTCATGCCGAGTCTCCTCTGCAACTGCATATTTCAACTGCTTTGATGGAAGACTTTATGAAACTTGCCAAGTCAAATACTAAGAAAAATTTGGAGACTTGCGGTGTCCTTGCTGGTTTGCTTAAAAACAGAAAATTTTATATTACTGCTCTAATAATCCCCAAGCAGGAATCAACCTCAGATTCTTGTCAGACTACAAATGAAGAGGAAATATTTGATGTGCAGGATAAACGATCACTTTTTCCCCTAGGGTGGATCCATACACATCCTACTCAATCTTGTTTCATGTCATCAATTGATCTACACACACATTACTCATATCAGATTATGCTGCCAGAATCTGTTGCAATAGTCATGGCGCCGACAGATAGTTCAAAAAACCATGGCATTTTTCGGCTGACAACCCCTGGGGGAATGTCTGTTATCAAACAATGTGATCAACGCGGCTTTCATCAACATAACCAGCCTCCAGATGGTGGTCTTATTTACGACACATGTACAGATGTTTACATGAACCCAAATTTAAAATTCGATGTCATCGATCTTCGATGA 1554 0.4112 MRSSYSSSSSSGAINVAMSAQKLEVDNRISLRFYYRIADNILRQADIFRAEKNIIDLYVMLLRFSSLASETIPRHREYRSSPQSKKQSLKKGLLISLNELETLKPLVQQKINELNSKIAHQQNGRGNFHSNNSVDFSPVRKQTLASNNGQIKAVRATAKEYVYQGSSGQQFSYVRPVEEQVRRLSLTLPPPKLETLSRHSILGPNGLNGQWRPPTINTGVRYPTNIDLSPVELPSLRPPLEDVSLSNKDNSIAELHKLDLNSIPTDSEDRQPQRTQESPSLISFEATETSDRIEVIRQPSPPPVLAEVQDLVPAVSPHINEGGCKTEIPSSDSCVHAESPLQLHISTALMEDFMKLAKSNTKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTNEEEIFDVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPTDSSKNHGIFRLTTPGGMSVIKQCDQRGFHQHNQPPDGGLIYDTCTDVYMNPNLKFDVIDLR* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0253 517 MobiDBLite consensus disorder prediction 265 281 - -
Tpr5g0253 517 PANTHER AMSH-LIKE PROTEASE 6 517 - -
Tpr5g0253 517 Gene3D - 5 133 - -
Tpr5g0253 517 SMART pad1_6 342 470 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tpr5g0253 517 Gene3D Cytidine Deaminase, domain 2 326 517 - -
Tpr5g0253 517 SUPERFAMILY JAB1/MPN domain 342 473 - -
Tpr5g0253 517 MobiDBLite consensus disorder prediction 258 281 - -
Tpr5g0253 517 CDD MPN_AMSH_like 342 517 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Tpr5g0253 517 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 340 446 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tpr5g0253 517 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 6 517 - -
Tpr5g0253 517 Pfam USP8 dimerisation domain 19 105 IPR015063 -
Tpr5g0253 517 ProSiteProfiles MPN domain profile. 343 473 IPR037518 -
Tpr5g0253 517 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0253 Tpr-Chr5 3668021 3676637 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0253 K11866 - gmx:100804754 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0253 5 3668021 3676637 Tpr5g0253 5 3668021 3676637 ECH