Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0026 ATGAATCGCCAAAAATCGATTCTCTCATTCTTCCACAAAACCTCGCCGGAAAATCGCACTTCCGGCGGCGCACAATCCTCCGTTCCGTCGTTTCAGCAAACCGACTGTAATATCAAGACAGTCGTCAATCCACCACCGCCGGCAGATGACGTCAGAGGAACAGACACACCGCCGGAGAAAGTGCCTCGTAAGGTTTTACCGGCGAACTTCGCGTCAAACACGAACACCGGCGGTTTGTTTGAGAGTATCATGCATAAATTTATCAAGGTCGATGATGGCGATAAAGTTAACCAGAGGAGCCAGTCATCAAATCATGATAGCTTCTCCAAACCATCTCCATCATCAACTATATTTACTGATACTAACCTGAAAAGACTGCAGAAAGAAGAAGCAGCAGCTTATAAACCTGTGGTGAAAGCGAAAGACAATGCTGTAAATTTTAAGGAAAAGGTTAACCGTGAAAATATGTTCCTGGTTGAAAATGACGATGATATTACTGGACCAGAAACCCCAGGGGTGCAGCCTCTTACTTCTAATGTAAAGCGAAGTCGAGAGGATGGGACCAAACTTTCTTCCTTGCGGGATTCTGGCAAACGAGTCAGATTTCTTGATGATTCATTGACACTAGACATGACTAAGAAGGAGTTAGAAGTTGCTAGCAAGTTTGAGTGGCTTGATCCTTCTCGAATAAGGGATGCAAATGGAAGAAGGCCCAATGATTCTTTATATGACAGGACAACACTTTATATACCTCCAGAGGTTATGAAGAAAATGACAGCATCACAGAAACAGTATTGGAGTGTTAAATGCAAATATATGGATGTTGTGTTATTCTTTAAAGTGGGAAAATTTTATGAGCTTTATGAAATGGATGCTGAAATTGGCCATAAGGAGCTTGATTGGAAAATAACAATGAGTGGTGTGGGAAAATGTCGGCAGGTTGGTATATCTGAAAGCGGGATTGATGATGCTGTTAAAAATCTGGTTGCTCGTGGATATAAGGTTGGGCGAGTGGAGCAATTGGAGACATCTGAAGAAGCAAAAGCAAGAGGAGCTAATTCTGTTATTCTAAGAAAATTAGTTCAGGTAGTCACCCCATCTACCAATGTGGATGGTAATATTGGCCCTGATGCAAACCATCTTCTTGCAATAAAAGAGGAAAACAATGGCTCGGATAATGGTTCAGTATCATATGGATTTGCTTTTGTTGATTGTGCCCGTCTTAGGTTATGGGTTGGTTCTATTGATGATGATGCGTCCTGTTCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCGAAGGAAATTATATATGAAAGCAGAGGGGTGTCCAAAGAAGCTCAGAAAGCATTTAGAAAATTCTCTTTAAATGGCTCCACAACACTACAATTGACTCCTATGCGGTCGATCACCGACTTGGTGAACTCGGAAATTAGTGATTTAATTCACTCAAAGGGATACTTCAAGGGTTCAGCTAATTCACTGGATCATGTGCTGACCAAAGTGATTCATCGTGAAATCACTTTGTCTGCTCTTGGTGGACTAATAGGTCATCTAAATAGATTGATGCTAGATGAGATCCTACAGAATGGGGACATATATCCGTACCAGGTTTATAAGGGTTGCCTCAAAATGGATGGTCCAACTTATATAAATCTAGAAATCTTTGGCAATAGCGACGATGGTGGAAAATCAGGTACCTTGTACAAGTATCTTGATAACTGCGTTACTTCATCTGGAAAGAGGCTTCTTAGGAACTGGATCTGCTGTCCACTGAAAGATGCTGAAGGAATTAATAATAGGCTTGATGTGGTAGATCATCTAATAGCTTCCCCTGAAATTGTGTCTCATATTGCACAACATCTTCGCAAGCTTCCAGATTTGGAACTATTAATTGGCCGAACAAAGTCCAGCCTAAAAGTATCAAGCCCTGTCTTACTGCCCTTGTTGGTGAAGAAAATATTGAAACAGAGGGTGAAAGTTTTTGGGTCACTTGTGAAAGGCCTTCGGACTACTTTGAGTTTGTTGCTTCTACTACAGAAAGAGCAGCCTCTAATATCATCCTTGACCAAAGTTTTTAAACTTCCAGTTCTGAATGGCAGCGAAGGGCTCGATCAATTTCTTACTCAGTTTGAAGCAGCTGTAGATAGTGACTTCCCAAATTACCAAAATCATGATGTTACAGATACAGATGCTGAAACACTCACAATACTTGCTGAATTATTTTTGGAGAAAGCTGCTCAATGGTTTGAAGTTGTTCATGCCATCAATTGCATTGACGTACTAAGATCTTTTGCTGTTACTTCTAGCTTTTCAAGTGGAACTATGTCTAGGCCTGTCATAGTGCCAACATCACAAAGTACCAATAAAGATAGTGGAGTGCCTGTGCTCAAAATGAAGGGGCTATGGCATCCATTTGCCCTTGGAGAGACTGGCCGTGAGCCCGTTCCAAATGATATGATCCTTGGTGAGAATGAAGACGGGAACCATCCTCGTACTTTGCTTCTGACAGGCCCAAACATGGGTGGAAAATCAACACTTTTACGTGCTACCTGTCTAGCTGTTATCATGGCCCAGTTAGGCTGCTATGTGCCGTGCGAAAATTGTGTTCTCTCAGTTGTGGATATCATCTTCACACGGCTTGGAGCCACAGATAGAATCATGGCAGGCGAGAGTACCTTCTTTATTGAGTGTACAGAAACTGCATCGGTGCTTCAGAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCATATGCTGTATTCCGGCATCTGATTGAAAAGGTTAACTGTCGCTTGCTATTCGCAACACATTACCATCCGCTAACAAAAGAATTTGCCTCTCATCCGCGTGTTACAATGCAACACATGGCCTGTGCTTTCAAGTCAAAATCTGATACCTTTTCCAAACAAGATCAGGAGCTAGTCTTCCTATATCGTCTTGCCTCTGGAGCATGTCCCGAAAGCTACGGATTACAGGTTGCGCTCATGGCTGGAATCCCAGAAAAAACTGTAAACATTGCTTCAAAGGCAAGCCAACAAATGAAAAAATCAATTGGAAAAAACTTCAGGTCAAGTGAACAGAGATCAGAGTTTTCAACTCTTCATGAAGAATGGTTGAAGACATTGATGTCTATGGCACAAATCGAGGATTGTGAATCTCTCGATGATGATGTTATGGATACATTAGTCTGTTTGCAGTATGAACTGAAAACTTCGTTTAAATCGGGCAAATAG 3279 0.4184 MNRQKSILSFFHKTSPENRTSGGAQSSVPSFQQTDCNIKTVVNPPPPADDVRGTDTPPEKVPRKVLPANFASNTNTGGLFESIMHKFIKVDDGDKVNQRSQSSNHDSFSKPSPSSTIFTDTNLKRLQKEEAAAYKPVVKAKDNAVNFKEKVNRENMFLVENDDDITGPETPGVQPLTSNVKRSREDGTKLSSLRDSGKRVRFLDDSLTLDMTKKELEVASKFEWLDPSRIRDANGRRPNDSLYDRTTLYIPPEVMKKMTASQKQYWSVKCKYMDVVLFFKVGKFYELYEMDAEIGHKELDWKITMSGVGKCRQVGISESGIDDAVKNLVARGYKVGRVEQLETSEEAKARGANSVILRKLVQVVTPSTNVDGNIGPDANHLLAIKEENNGSDNGSVSYGFAFVDCARLRLWVGSIDDDASCSALGALLMQVSPKEIIYESRGVSKEAQKAFRKFSLNGSTTLQLTPMRSITDLVNSEISDLIHSKGYFKGSANSLDHVLTKVIHREITLSALGGLIGHLNRLMLDEILQNGDIYPYQVYKGCLKMDGPTYINLEIFGNSDDGGKSGTLYKYLDNCVTSSGKRLLRNWICCPLKDAEGINNRLDVVDHLIASPEIVSHIAQHLRKLPDLELLIGRTKSSLKVSSPVLLPLLVKKILKQRVKVFGSLVKGLRTTLSLLLLLQKEQPLISSLTKVFKLPVLNGSEGLDQFLTQFEAAVDSDFPNYQNHDVTDTDAETLTILAELFLEKAAQWFEVVHAINCIDVLRSFAVTSSFSSGTMSRPVIVPTSQSTNKDSGVPVLKMKGLWHPFALGETGREPVPNDMILGENEDGNHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVLSVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTFSKQDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGKNFRSSEQRSEFSTLHEEWLKTLMSMAQIEDCESLDDDVMDTLVCLQYELKTSFKSGK* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0026 1092 MobiDBLite consensus disorder prediction 94 116 - -
Tpr5g0026 1092 SUPERFAMILY DNA repair protein MutS, domain I 247 368 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 MobiDBLite consensus disorder prediction 1 30 - -
Tpr5g0026 1092 MobiDBLite consensus disorder prediction 100 116 - -
Tpr5g0026 1092 Pfam MutS domain V 835 1029 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 Pfam MutS domain II 379 525 IPR007860 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 Gene3D - 788 1084 IPR027417 -
Tpr5g0026 1092 SMART DNAend 563 810 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 243 1084 - -
Tpr5g0026 1092 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 243 1084 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Tpr5g0026 1092 Pfam MutS domain III 549 766 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 Gene3D DNA repair protein MutS, domain I 217 377 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 795 1031 IPR027417 -
Tpr5g0026 1092 ProSitePatterns DNA mismatch repair proteins mutS family signature. 912 928 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 CDD ABC_MSH6_euk 798 1022 - -
Tpr5g0026 1092 Gene3D - 545 773 - -
Tpr5g0026 1092 MobiDBLite consensus disorder prediction 163 190 - -
Tpr5g0026 1092 Pfam MutS domain I 260 371 IPR007695 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 Gene3D MutS, connector domain 378 544 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 SMART mutATP5 831 1027 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 PIRSF Msh6 721 1076 IPR017261 GO:0006298|GO:0030983
Tpr5g0026 1092 PIRSF Msh6 68 732 IPR017261 GO:0006298|GO:0030983
Tpr5g0026 1092 SUPERFAMILY DNA repair protein MutS, domain II 377 558 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tpr5g0026 1092 SUPERFAMILY DNA repair protein MutS, domain III 546 770 IPR036187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0026 Tpr-Chr5 353448 362766 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0026 K08737 - gmx:100818859 1707.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0026 5 353448 362766 Tpr5g0026 5 353448 362766 ECH