Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4779 ATGGCCCGTGTTTATATTGGGAATTTGGACCCTCGAGTCACTGAGAGGGAACTCGAAGATGAATTTCGTGTCTACGGTATTCTCCGAAGTGTTTGGGTTGCTCGCAGGCCACCAGGATATGCATTTATCGAGTTTGATGATAGGAGGGATGCCCTTGATGCAATTCATGCCTTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGAGTGGAGGAGGAGGCCGTGGTGGTGGGCGCGGCGGACGTGGAGGGGAAGACCTGAAGTGCTATGAATGCGGTGAACCCGGACACTTTGCTCGGGAGTGCCGTTCACGTGGTGGTTCACGAGGCCTAGGAAGTGGAAGAAGACGAAGTCCTAGTCCTTATTATCGTGGGCGTCGAAGTCCAAGTTACGGTTATGACCGCAGGAGCTATAGCCCGTGTGGGAGAAGATCTCCAAGACGACGTAGCATAACTCCTCGTGGTCGTAGCTACAGCAGATCCCCTCCTCCATACCGTTATTCCCGCCGTGATTCACCCTATGCCAATGGAGATTAA 549 0.5209 MARVYIGNLDPRVTERELEDEFRVYGILRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKSGGGGRGGGRGGRGGEDLKCYECGEPGHFARECRSRGGSRGLGSGRRRSPSPYYRGRRSPSYGYDRRSYSPCGRRSPRRRSITPRGRSYSRSPPPYRYSRRDSPYANGD* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4779 182 SUPERFAMILY Retrovirus zinc finger-like domains 84 110 IPR036875 GO:0003676|GO:0008270
Tpr4g4779 182 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Tpr4g4779 182 ProSiteProfiles Zinc finger CCHC-type profile. 92 108 IPR001878 GO:0003676|GO:0008270
Tpr4g4779 182 Pfam Zinc knuckle 92 107 IPR001878 GO:0003676|GO:0008270
Tpr4g4779 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Tpr4g4779 182 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1 2 180 - -
Tpr4g4779 182 SMART rrm1_1 3 69 IPR000504 GO:0003723
Tpr4g4779 182 SMART c2hcfinal6 92 108 IPR001878 GO:0003676|GO:0008270
Tpr4g4779 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Tpr4g4779 182 MobiDBLite consensus disorder prediction 108 182 - -
Tpr4g4779 182 Gene3D - 2 68 IPR012677 -
Tpr4g4779 182 Gene3D - 69 147 - -
Tpr4g4779 182 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 180 - -
Tpr4g4779 182 CDD RRM_SRSF3_like 3 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4779 Tpr-Chr4 56403391 56407196 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4779 K12896 - tcc:18609404 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4779 4 56403391 56407196 Tpr4g4779 4 56403391 56407196 ECH