Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4775 ATGACTCATTTTCATTTGAGACAAAAACTACTCTTCTCATTTATACTAATCCTTTCATTAACAACATTTGTTTCTTCACATAGCAGGCCCTATTCAACTCCAAGTGTCACACACATAACTGATTCTTTTCCTCATGTACCAATAGAAAGTGCTTTTTCTAATGCTTTCGGAGCCTCACATGTCAAGTTTCTTAGTAATGGGTCCATGGTCACTTTGGCTCTTGACAAAATCTCAGGCTCTGGCTTGGTCTCTCAAAATAGATACTCATATGGATTCTTTAGTGCTGCAATCAAATTACCTGCTGGTTTGTCACCTGGAGTTGTAGTTGCTTTTTATTTGTCAAATGCAGATAAATTCCCTCACAGCCATGATGAGATAGATATTGAACTACTTGGTCATGACAAAAGAAATGATTGGGTGATTCAAACAAATCTCTATGCCAATGGAAGTGTCAGCACAGGAAGAGAAGAGAAATTCTATCTTTGGTTTGATCCAACACAGCAGCACCATTATTATAGCATCTTATGGAACAGCTATCACACTGTGTTTTTTGTTGACAATATTCCAGTGAGAGAATTCACACACAAAAACACATACCCATTTATTTATCCATCAAAACCAATGTCATTATATGCAACAATATGGGATGGTTCAGAATGGGCTACACATGGAGGAAAATACCCTGTTAACTACAAATATGGACCATTTGTTGTTTCATTTACTGAAATGGAATTAAGTGGTTGCATAGCTGATCCAAAAGTACCATTTTCTTCATGTTCTAATTCAAATCCTTCAGGACTAGACCCTGTTAATGGAGCAGAGTTTAATAAGCTTTCACAGCAACAAATAGCAGCTATGGATTGGGCTAGAAGAAAACTCATGTTTTATTCTTATTGTAATGATAGACCTAGATACAAAGTTTTGCCAGCAGAATGTCACTAA 942 0.3641 MTHFHLRQKLLFSFILILSLTTFVSSHSRPYSTPSVTHITDSFPHVPIESAFSNAFGASHVKFLSNGSMVTLALDKISGSGLVSQNRYSYGFFSAAIKLPAGLSPGVVVAFYLSNADKFPHSHDEIDIELLGHDKRNDWVIQTNLYANGSVSTGREEKFYLWFDPTQQHHYYSILWNSYHTVFFVDNIPVREFTHKNTYPFIYPSKPMSLYATIWDGSEWATHGGKYPVNYKYGPFVVSFTEMELSGCIADPKVPFSSCSNSNPSGLDPVNGAEFNKLSQQQIAAMDWARRKLMFYSYCNDRPRYKVLPAECH* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4775 313 Pfam Glycosyl hydrolases family 16 51 232 IPR000757 GO:0004553|GO:0005975
Tpr4g4775 313 SUPERFAMILY Concanavalin A-like lectins/glucanases 52 312 IPR013320 -
Tpr4g4775 313 Gene3D - 31 312 - -
Tpr4g4775 313 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 6 313 IPR044791 GO:0004553
Tpr4g4775 313 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 6 313 - -
Tpr4g4775 313 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 276 312 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tpr4g4775 313 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 41 240 IPR000757 GO:0004553|GO:0005975
Tpr4g4775 313 PIRSF EndGlu_transf 8 313 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4775 Tpr-Chr4 56325561 56328561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4775 13 313 Glycoside Hydrolase AT1G10550 62.295 2.45e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4775 K08235 - gmx:100778993 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4775 4 56325561 56328561 Tpr4g4775 4 56325561 56328561 ECH