Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4770 ATGAGGAATTGGATGAGCATGATGGCGATGAGCGCAGTTGCAAACTCAACATTTCTTCCTCTCAAAACCATTATCCCCTTTTCTCTCACCAAAACGTCGCCGTTTCTCTTTTCTCTCACCACTCCCTCTCGCCGCTATCTTTCTGCTTCCGCTCTTCCTTCTATATCCACTGACCATGAGTTCAACTTCTCTGATTCTTCTGGAGATGGAAACGGTGTTGCAGTTTCAAGAAAAAGTTCCAAAGTTCTTCTTAAAGGGATGACTTATTCTGAACTTGAAAAATGGGTTCAATCACATGGATACAGGCCAGGGCAGGCCATTATGTTATGGAAGCGTATGTATGGAAACAACATTTGGGCACATCATACTGATGAGTTGGAAGGTTTGAACAAGGATTTCAAGAAGATGTTGAGCGAAAATGCAGATTTCATGGCACTTGCTGTGAAAGAAATTCACGCAGCGTCTGATGGAACTAGAAAGATTTTATTCACATTAGATGATGGAATGGTCATAGAAACAGTTGTGATACCTTGTGATAGAGGCAGGACTACTGTGTGTGTTTCCAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACTGGAAGAATGGGTCTTAAGAGACATCTTACTGCCGCAGAAATAGTTGAGCAGGCCGTTTTTGCCAGACGGCTATTCACAAGTGAAGTTGGTTCCATCACCAATGTTGTGTTTATGGGCATGGGGGAACCACTTCATAACATTGATAATGTCATTAAAGCTGCAGATATTATGGTGGATGATCAAGGGCTTCATTTCAGCCCCCGCAAGGTCACTGTTTCAACCAGTGGGCTTGTTCCGCAGCTCAGACGTTACCTTCAGGAATCCAACTGTGCTATTGCTGTTAGTTTGAATGCAACTAATGATGAGGTGAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGACTTGCTTCTTGAGACGCTTCGGGAGGAGCTTTCCTTCAAACACAAATATAAGGTTCTATTTGAGTATGTGATGCTTGAAGGAATTAATGACAGCAATGAAGATGCAAAGAGGCTTACTGAACTTGTGAAGGGGATCCCTTGCAAGATCAATCTCATCTCATTCAATCCACATAGTGGATCCTTCTTCAAACCAACTAAAGAGGAAAGGATGATTGAATTCCGAAATATGCTAGCTGAGGCAGGATGCATAGTCCTTTTAAGACCGAGTAGAGGCGATGATCAAATGGCCGCATGTGGTCAGTTAGGCAAGCCCGGTACCATTCAAGCTCCGATGCTTCGTGTCCCTCAGCAATTCCAAATGGCAGTGGGAAGTTCAACGTGA 1338 0.4312 MRNWMSMMAMSAVANSTFLPLKTIIPFSLTKTSPFLFSLTTPSRRYLSASALPSISTDHEFNFSDSSGDGNGVAVSRKSSKVLLKGMTYSELEKWVQSHGYRPGQAIMLWKRMYGNNIWAHHTDELEGLNKDFKKMLSENADFMALAVKEIHAASDGTRKILFTLDDGMVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLFTSEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDDQGLHFSPRKVTVSTSGLVPQLRRYLQESNCAIAVSLNATNDEVRNWIMPINRKYKLDLLLETLREELSFKHKYKVLFEYVMLEGINDSNEDAKRLTELVKGIPCKINLISFNPHSGSFFKPTKEERMIEFRNMLAEAGCIVLLRPSRGDDQMAACGQLGKPGTIQAPMLRVPQQFQMAVGSST* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4770 445 SUPERFAMILY Radical SAM enzymes 181 399 - -
Tpr4g4770 445 PANTHER 23S RRNA METHYLTRANSFERASE 49 428 IPR040072 -
Tpr4g4770 445 SFLD adenosine C2 methyltransferase (RlmN-like) 78 422 IPR004383 GO:0006364|GO:0008173
Tpr4g4770 445 Pfam 4Fe-4S single cluster domain 192 297 - -
Tpr4g4770 445 ProSiteProfiles Radical SAM core domain profile. 179 412 IPR007197 GO:0003824|GO:0051536
Tpr4g4770 445 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 78 421 IPR027492 GO:0030488|GO:0070475
Tpr4g4770 445 CDD Radical_SAM 192 392 - -
Tpr4g4770 445 SFLD Radical SAM 78 422 IPR007197 GO:0003824|GO:0051536
Tpr4g4770 445 Gene3D Aldolase class I 145 426 IPR013785 -
Tpr4g4770 445 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 49 428 - -
Tpr4g4770 445 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 81 426 IPR027492 GO:0030488|GO:0070475
Tpr4g4770 445 Gene3D - 81 143 - -
Tpr4g4770 445 Pfam Radical SAM superfamily 188 352 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4770 Tpr-Chr4 56270220 56282862 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4770 K06941 - gmx:100813692 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4770 4 56270220 56282862 Tpr4g4770 4 56270220 56282862 ECH