Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4746 ATGGACAAATTCTTCTTGGTTTCCTTACTTGGTTTGTTGATAGTAGCGAATGGAGTTTTAGGAAGCATGATGTGTGACAACAACTTTGGCATGCTTGAAGAACTCAACAACTTGGACACGGAGGAAGAGAATGAGGTTGAACTTTCTGACATCCCTTCATGGACAAGCGAACGTGGCGGTAAAGTTCTTGTGAATGTTGATAGTTTTGGTGCTGTCGGAAATGGAGAAGCTGATGATACTGAGGCTCTTCAAAAAGCATGGGGAGTTGCTTGTTCTACAGCAAAATCTGTTCTATTGGTTCCCCAAGGACGCCGTTACCTTGTCAATGCAACGAAATTCATAGGGCCTTGTAAAGACAATTTAATCATCCAGATTGACGGAACACTGGTTGCTCCGGACAATCCTAAGGACTGGGATCCAAAACTTCCACGTGTTTGGCTTGATTTTTCAAAGTTGAAAAAAGCTGTTTTCCAAGGTTCTGGAATTATTGATGGCTCAGGAAGTAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGGCTAATCCTTGCAAAGGTGCACCAACAGCACTAACCATTGATACAAGTTCATCTATAAAGGTGAAAGGACTAACTATCCAGAATAGCCAACAGATGCATTTTACGATATCGAGATGTGATTCTGTTCGAATTTTAGGAGTGAAAGTGTCTTCACCAGGAGACAGTCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTCATTGTCCAAGACTGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTGAATGCTAGTTCTAATATCAAAATGAAGAGAATTCATTGTGGACCGGGACACGGAATCAGCATTGGAAGCCTTGGTAAAGACAACTCAACAGGTGTAGTGACAAAAGTGATTTTGGATACAGCTTTTATAAAGGATACTACCAATGGTCTCAGAATTAAGACTTGGCAGGGAGGTGCTGGATATGTCAAAGGGGTAAGATTTCAGAATGTGATGGTGGAAAATGTATCAAACCCTATTCTTATAGATCAATTTTACTGTGATTCGCCAACCTCATGTCAAAACCAGTCATCAGCTTTGGAGATAAGTGAGATAATGTACCAAAACATAACTGGGACTACAAATAGTGCCAAGGCCATTAAATTTGATTGCAGTGACACTGTTCCATGCAGCAACTTAGTCCTTAGCAATGTGAATTTGAATAAACAAGATGGCACAGTTGAAACATATTGTCACTCAGCTCAAGGATTTGGATATGGTGTAGTTCATCCTTCTGCTGATTGCCTTAATTCCAGTGATAAAATCTCTCAAGTTGATGATTCTCAATCTATTACTTCTGAGGATGATGACATTCGTCACACAGAACTATAA 1383 0.3991 MDKFFLVSLLGLLIVANGVLGSMMCDNNFGMLEELNNLDTEEENEVELSDIPSWTSERGGKVLVNVDSFGAVGNGEADDTEALQKAWGVACSTAKSVLLVPQGRRYLVNATKFIGPCKDNLIIQIDGTLVAPDNPKDWDPKLPRVWLDFSKLKKAVFQGSGIIDGSGSKWWAASCKKNKANPCKGAPTALTIDTSSSIKVKGLTIQNSQQMHFTISRCDSVRILGVKVSSPGDSPNTDGIHISESTNVIVQDCKIGTGDDCISIVNASSNIKMKRIHCGPGHGISIGSLGKDNSTGVVTKVILDTAFIKDTTNGLRIKTWQGGAGYVKGVRFQNVMVENVSNPILIDQFYCDSPTSCQNQSSALEISEIMYQNITGTTNSAKAIKFDCSDTVPCSNLVLSNVNLNKQDGTVETYCHSAQGFGYGVVHPSADCLNSSDKISQVDDSQSITSEDDDIRHTEL* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4746 460 Pfam Glycosyl hydrolases family 28 93 415 IPR000743 GO:0004650|GO:0005975
Tpr4g4746 460 ProSitePatterns Polygalacturonase active site. 275 288 IPR000743 GO:0004650|GO:0005975
Tpr4g4746 460 Gene3D - 53 459 IPR012334 -
Tpr4g4746 460 SUPERFAMILY Pectin lyase-like 62 433 IPR011050 -
Tpr4g4746 460 PANTHER BNAA08G20470D PROTEIN 2 444 - -
Tpr4g4746 460 PANTHER - 2 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4746 Tpr-Chr4 55968102 55972942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4746 24 460 Glycoside Hydrolase AT1G23460 68.793 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4746 - - mtr:MTR_8g065030 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4746 4 55968102 55972942 Tpr4g4746 4 55968102 55972942 ECH