Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4745 ATGTATAAACAATTACAAACTAAATGTTGTCGAAACCTCAAAAACACCTTCATCAGACCCATAACAACAACAACAACTGATTATGTCTACGTTAACAATCGCAAAATTGATGCTTTCATAAAATCAAAAAACCCAAACTCAGCACTTGAACTGTTCCACAACATGCAAATCCGTGACACTGTCACCTACAACTTGCTTATTTCATCATCCTCTTGTTTGCCACCCAAGAAAGCTTTTAAACTTTATGCTGAAATGGGTTTGTTTGGAATAACTGAAACTTCAACTACTTTTGCTTCTGTTATAGCTCTTTGTACAAATAATGGGTTTTGGAACGAAGGTTCTCAGGTTCAATGTAGGGTTATAAAGTTTGGATTTTTGAACAGTGTGTTTGTTGGTGGTGCACTTGTTGGGTTCTATATGAATTTTAAGTTAAGTCGGGTTGCACTTGAACTGTTTGATGAGTTGTCTGAGAGAAATTTGGCTGTTTGGAATGTGATGTTACGTGGGTTTTGTGAAATGGGTTGTGTGGTGGAAGAGTTACTTGGACTTTACTCTAGGATGTGTTTTGAAGGTGTGGACCCAAATGGGGTTACTTTTTGTTATTTGCTTAGGGGGTGTAGTAGTAATAGAAGGTTTCATGAAGGGGAGATGCTTCAAAGCTGTGTTTTCAAGATGGGTTTGGTGGAATCTAATGTTTTTGTTGCTAATGCTTTGGTGGATTTTTACTCTGCATGTGGGTGTTTTGTTGGTGCAAGGAAGTGTTTTGAAGGGATAAAAGTTGAGGATGTTATTTCATGGAACTCTTTGGTTTCTGTTTACGCAGACAATAATTTGGTAATTGATGCTTTGGAGTTTTATAATTTTATGCAACTTTGGGGACATAGGCCGTCGGTTCGTTTGTTTGTTGGTTTTTTGAATTTATGTAGTAGAACTAAGGACATTGGTTTGGGGAAACAGATTCATTGTTGTGTTATGAAATATGGTTTTGATGAAAGGAGTGTGTATGTTCAATCTGCTTTGATTGATATGTATGGAAAATGTTTGGACATTGAGAGTTCTGTAGATGTATTTGAATGGCTTCCTAAGAGAACTTTGGAGTGTTGTAATTCATTGATGACTTCTTTGTCTCATTGTGGTTGTATTGAAGATGTGGTGGAATTGTTTGGTTTAATGGTTGATGAAGGTCTTATGCCAGATGAAGTAACTGTCTCGATGACATTGAAGGCAATATCGGTGTTTGCTTTGGCAAGTTTTACTAGCACTCAGTTACTGCATTGTGTTGCATTGAAATCTGGAGTTGAAGGAGACGCTGCGGTTCTGTGTTCCCTTATGGATGCATATTCAAGATGTGGACACGTGGAACTTTCTCATCAGATTTTCGAGACAATTCCAACACCAAATGCCATTTGCTTCACTTCTATGATCAATGGTTATGCCCGAAATGGAATGGGAAAAGAAGGACTTTCGTTGCTTCATGCTATGATCGAGAAAGGAGTAAAACCGGACGAAGTTACCTTCTTATGTGCATTAACGGGGTGTAGCCACACCGGACTGGTCAAGGAAGGAAAAGTACTCTTTAACTCAATGAAATCTGTTTACGATGTTCACCCAGATCGGCGACATTTTTCATGCATGGTGGATCTTTTATGTCGCGTAGGACTTCTACATGAAGCCGAAGAGTTTCTTCTAAAGGCACAGGGAAAAGGAGACTGTTTTATGTGGAGCTCTTTGCTCCAAAGTTGCAGGGTTCACAAGAATGAAGAGGTTGGAACAAGAGCAGCACAAATGTTGGTTGATCTAGATCCATATGACCCTGCAGTGTGGTTGCAAGCTTCAAATTTCTATGCAGAGATAGGAAAATTCGACGCCTCAAGACAAATAAGAGAAGTCGCTCTAGCCAGAAAGATGTATAGGGAGATTGGTTGTAGTTTAATTGAGATAAGAAAGTGA 1950 0.3882 MYKQLQTKCCRNLKNTFIRPITTTTTDYVYVNNRKIDAFIKSKNPNSALELFHNMQIRDTVTYNLLISSSSCLPPKKAFKLYAEMGLFGITETSTTFASVIALCTNNGFWNEGSQVQCRVIKFGFLNSVFVGGALVGFYMNFKLSRVALELFDELSERNLAVWNVMLRGFCEMGCVVEELLGLYSRMCFEGVDPNGVTFCYLLRGCSSNRRFHEGEMLQSCVFKMGLVESNVFVANALVDFYSACGCFVGARKCFEGIKVEDVISWNSLVSVYADNNLVIDALEFYNFMQLWGHRPSVRLFVGFLNLCSRTKDIGLGKQIHCCVMKYGFDERSVYVQSALIDMYGKCLDIESSVDVFEWLPKRTLECCNSLMTSLSHCGCIEDVVELFGLMVDEGLMPDEVTVSMTLKAISVFALASFTSTQLLHCVALKSGVEGDAAVLCSLMDAYSRCGHVELSHQIFETIPTPNAICFTSMINGYARNGMGKEGLSLLHAMIEKGVKPDEVTFLCALTGCSHTGLVKEGKVLFNSMKSVYDVHPDRRHFSCMVDLLCRVGLLHEAEEFLLKAQGKGDCFMWSSLLQSCRVHKNEEVGTRAAQMLVDLDPYDPAVWLQASNFYAEIGKFDASRQIREVALARKMYREIGCSLIEIRK* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4745 649 TIGRFAM PPR: pentatricopeptide repeat domain 469 503 IPR002885 -
Tpr4g4745 649 TIGRFAM PPR: pentatricopeptide repeat domain 264 297 IPR002885 -
Tpr4g4745 649 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Tpr4g4745 649 TIGRFAM PPR: pentatricopeptide repeat domain 162 195 IPR002885 -
Tpr4g4745 649 Pfam PPR repeat family 159 207 IPR002885 -
Tpr4g4745 649 Pfam PPR repeat family 466 514 IPR002885 -
Tpr4g4745 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Tpr4g4745 649 PANTHER OS01G0913400 PROTEIN-RELATED 22 643 - -
Tpr4g4745 649 Gene3D Tetratricopeptide repeat domain 31 187 IPR011990 GO:0005515
Tpr4g4745 649 Gene3D Tetratricopeptide repeat domain 465 643 IPR011990 GO:0005515
Tpr4g4745 649 Pfam PPR repeat 61 90 IPR002885 -
Tpr4g4745 649 Pfam PPR repeat 36 56 IPR002885 -
Tpr4g4745 649 Pfam PPR repeat 367 396 IPR002885 -
Tpr4g4745 649 Pfam PPR repeat 264 293 IPR002885 -
Tpr4g4745 649 Pfam PPR repeat 542 569 IPR002885 -
Tpr4g4745 649 Gene3D Tetratricopeptide repeat domain 215 315 IPR011990 GO:0005515
Tpr4g4745 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Tpr4g4745 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Tpr4g4745 649 PANTHER - 22 643 - -
Tpr4g4745 649 Gene3D Tetratricopeptide repeat domain 316 417 IPR011990 GO:0005515
Tpr4g4745 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 194 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4745 Tpr-Chr4 55965595 55967993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4745 33 647 Glycoside Hydrolase AT3G49170 30.192 1.20e-86 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4745 - - lja:Lj0g3v0314629.1 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4745 4 55965595 55967993 Tpr4g4745 4 55965595 55967993 ECH