Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4437 ATGCACTTCGCAATGGATTTCGCAAAACACATAACCACAAAACCTCCCTTAATCTTCACACGTCCTTTAACCTGGATAACTTCCACTATCCCCCGTTACCAACCCCGCCACTCTCCACCGCCACCGCCACCGCCGCCGCCACTGCCAGATTCAAACAAACCGCAACTAACTTCTCTACCTTCTATCCTTTCTCACAAAGTTCTAGATTCTTCCAAATGCAAAACGATTTTACCTCATTTAACATCTCACGAATTCGAACGCTTATTCTTCATTCATCATTCCACCGTTAACCTCAAAACGACGCTCGATTTCTTCCGTTTTGCTTCAACTCAATACAAGTTTCGTTTCACCGTTCGTTCTAACTGTCTTTTGATTCGTTTGCTTCTTGCTTCGAATCATTTGCCGCGTGCTAGGTTTATGTTGAAACGTTTAATCAACGGCAATGTTTTGACGCCGTTGAAAAACATTGACGGTAGGCTTAGTGAGATTGCTTCGTCGTTTCTTGAACTGAATCGGTTAACGGATCAAAGTTACGGTGAATTGGATTTGTTGCTTTATATTTTGTGTTCACAGTTTCAGCATTTAGGTTTTCATTGGGCTTTTGATATTTTCACATTGTTTACTAGTAATGGTGTTTTTCCGTCGCTTAAAACATGTAATTTTTTGATGAGTTCTTTGGTGAAATCCAATGAACTTCACAAGAGTTATAGAGTTTTTGACGCCGTTTGTCGTGGTGGTATTTCTCTTGATGTTTACACGTATGCAACTGCGATTAACGCGTTTAGTAAGGGTGGAAAGGTTGATGATGCGGTTGGTTTGTTTTTCAAAATGGAGGAGCAAGGTGTTTTGCCTAATGTGGTTACTTACAATAACTTGATTGATGGGTTATGTAAGTGTGGAAGGTTAGAAGAAGCTTTTAGGTTTAAAGATAAGATGGTTGAGAACAAAGTTAACCCTAGTTTAGTTACTTACGGTATTCTTGTTAATGGTTTGATGAAGGCTGGGAAATTTGATGAGGTGAATTCGGTTTTGGTTGAAATGTATAGCAAGGGGTTTTCCCCTAATGAGTTTGTTTTTAATGCACTTATTGATGGATATTGCAGGAAAGGGAATATGAATGATGCATTGAGGATTAGGGATGACCTGAAGTTGAAGGGATTGAAACCTAATGCTGTTACTTTTAATACTCTTTTACAGGGTTTTTGTAGGAGCAATCAAATGGAGCAAGCTGAGCAAGTGTTAGAGTACTTGTTATCGAACGGTTTGTCCGTTAACGAGGATGCTTGTTCTTATGTGATTAACTTGTTATGCAATAGTTCCAGGTTTGATTCGGCCTTGGAAATTGTCAAGGAGTTGTTATTGAGGAACATTAGGGTTAATGATAGCTTGCTAACTTTGTTGGTCTGTGGACTTTGTAAATGTGGAAAACACTCAGAGGCGATTCAGCTTTGGTTTAGACTAGCAGATAAAGGGCTTCCAGCGAATACTGCGACATCGAATGGGCTTCTCGATGGACTTTGTGAAAGGGGGAACATGGAAGAGGTCTTTGCGGTAGGCAAACAAATGGTGGAGAGAGGTTTGATACTCGATGGGATTTCATACAACACACTAATTTTTGGCTGTTGTAAATCAGGTAAAATCGAGGAAGCTTTCAAGCTTAAGGAAGAGATGGTGAAGCAAGGATTCAAACCTGATACTTATACCTACAATTTCCTAATGAAAGGGTTAGCTGATAAGGGTAAACTAGATGATGTTGATAAGGTTTTGCATGAAGCCTTAGAACGTGGCGTGGTTCCAAATATCTATACATATGCATTAATGTTGGAAGGATATTGTAAGGCTGATAGGATTGATAATGCTGTGAGCTTGTTCAACAATTTAGTTCATAAGGAAGTAGAACTTAGTTCTGTTGTTTATAACATACTTATTGCAGCCCATAGTAAAGCTGGGAATTTTATGGAAGCCTTCAAACTCCGTGATGCTATGAAAAGTAGGGACATTCTTCCTACGATTCCCACATATTCTTCTATAATACATGGAATGTGCCGTATTGGCCGTATTGAGGAGGCGAAGGAAATTTTTGAAGAAATGAGAAATGAAGGATTGATGCCAAATGTGTTTTGTTACACTGCTCTAATTGGTGGTTACTGTAAATTAGGTCAGATGGATGAAGTTTATAGTATCTTACAGGAAATGACATCAAAATGTATACAGCCTAATAAAATTACATACACTATTATGATTGATGGTTATTGTAAATTGGGAAATACGAAAGAAGCGACTAAGCTTTTAAATGAAATGATATCAAATGGAATATCACCGGATACTGTTACTTACAATGTATTGCAAAAAGGATATTGCATGGAAAAGGAGCTCGATGAAACTCTTCAATGCAATCAGGTGCCTAATACAGGAGTACCCATAGAAGAAATAACATATGCCACATTGGTTGAGAAGTTGCATCCACACACAGATGCAGCAATTAGTAATCAAGATTAA 2499 0.385 MHFAMDFAKHITTKPPLIFTRPLTWITSTIPRYQPRHSPPPPPPPPPLPDSNKPQLTSLPSILSHKVLDSSKCKTILPHLTSHEFERLFFIHHSTVNLKTTLDFFRFASTQYKFRFTVRSNCLLIRLLLASNHLPRARFMLKRLINGNVLTPLKNIDGRLSEIASSFLELNRLTDQSYGELDLLLYILCSQFQHLGFHWAFDIFTLFTSNGVFPSLKTCNFLMSSLVKSNELHKSYRVFDAVCRGGISLDVYTYATAINAFSKGGKVDDAVGLFFKMEEQGVLPNVVTYNNLIDGLCKCGRLEEAFRFKDKMVENKVNPSLVTYGILVNGLMKAGKFDEVNSVLVEMYSKGFSPNEFVFNALIDGYCRKGNMNDALRIRDDLKLKGLKPNAVTFNTLLQGFCRSNQMEQAEQVLEYLLSNGLSVNEDACSYVINLLCNSSRFDSALEIVKELLLRNIRVNDSLLTLLVCGLCKCGKHSEAIQLWFRLADKGLPANTATSNGLLDGLCERGNMEEVFAVGKQMVERGLILDGISYNTLIFGCCKSGKIEEAFKLKEEMVKQGFKPDTYTYNFLMKGLADKGKLDDVDKVLHEALERGVVPNIYTYALMLEGYCKADRIDNAVSLFNNLVHKEVELSSVVYNILIAAHSKAGNFMEAFKLRDAMKSRDILPTIPTYSSIIHGMCRIGRIEEAKEIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDEVYSILQEMTSKCIQPNKITYTIMIDGYCKLGNTKEATKLLNEMISNGISPDTVTYNVLQKGYCMEKELDETLQCNQVPNTGVPIEEITYATLVEKLHPHTDAAISNQD* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4437 832 Gene3D Tetratricopeptide repeat domain 347 469 IPR011990 GO:0005515
Tpr4g4437 832 Gene3D Tetratricopeptide repeat domain 685 832 IPR011990 GO:0005515
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Tpr4g4437 832 Pfam PPR repeat 498 527 IPR002885 -
Tpr4g4437 832 Pfam PPR repeat 465 491 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Tpr4g4437 832 Pfam PPR repeat family 284 333 IPR002885 -
Tpr4g4437 832 Pfam PPR repeat family 354 403 IPR002885 -
Tpr4g4437 832 Pfam PPR repeat family 635 683 IPR002885 -
Tpr4g4437 832 Pfam PPR repeat family 532 577 IPR002885 -
Tpr4g4437 832 Pfam PPR repeat family 704 753 IPR002885 -
Tpr4g4437 832 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 18 812 - -
Tpr4g4437 832 Pfam PPR repeat 595 625 IPR002885 -
Tpr4g4437 832 Pfam PPR repeat 246 278 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Tpr4g4437 832 SUPERFAMILY HCP-like 471 657 - -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 740 774 IPR002885 -
Tpr4g4437 832 Gene3D Tetratricopeptide repeat domain 189 346 IPR011990 GO:0005515
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Tpr4g4437 832 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 18 812 - -
Tpr4g4437 832 Gene3D Tetratricopeptide repeat domain 470 581 IPR011990 GO:0005515
Tpr4g4437 832 Gene3D Tetratricopeptide repeat domain 582 684 IPR011990 GO:0005515
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 637 670 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 500 530 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 673 706 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 707 740 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 532 566 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 602 634 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 742 776 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 392 426 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 322 356 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 567 601 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 358 391 IPR002885 -
Tpr4g4437 832 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 739 IPR002885 -
Tpr4g4437 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4437 248 810 Glycosyltransferase AT1G05670 27.051 1.21e-71 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4437 - - gmx:100819570 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4437 4 52052161 52058541 Tpr4g4437 4 52052161 52058541 ECH