Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4403 ATGGAATCGCAAGCCGACTCAGCTCGCGAATCAACAACACGCCCTAGACTCTTCATCAAAGAGATGGTTATGCAGAACTTCAAGTCTTATGCGGGTGAACAACGCGTTGGCCCCTTTCATAAGAGTTTTTCGGCTGTGGTTGGACCAAATGGAAGTGGAAAGAGTAATGTGATTGATGCTATGTTGTTTGTTTTCGGGAAGCGAGCGAAGCAGATGAGATTGAATAAAGTTTCGGAGCTTATCCATAATTCTTCCAATCACCAGAATTTGGATAGTGCTGGGGTTTCTGTTCATTTTCAGGAGATTGTCGATACGGAAGATGGAACATATGAGGCTGTTCCTGGAAGTGATTTTGTAATTAAAAGGGTGGCTTTTCGGGACAACTCCTCTAAGTATTACATTAATAACCGTTCAAGTAACTTCACTGAAGTTACCAAGATATTGAAAGGGAAAGGTGTTGACCTTGACAATAATAGGTTTCTGATCCTTCAGGGTGAAGTTGAGCAGATTTCACTTATGAAGCCAAAATCTCAAGGACCTCATGATGAAGGCTTTCTAGAGTATTTAGAAGATATCATTGGGACCAACAAATATGTAGAAAAAATTGATGAGTCATATAAACAGTTGGAATCTCTAAATGAGAGAAGATCCGGGGTGGTGCAAATGGTTAAGCTATCTGAGAAAGAAAGAGACAGCTTGGAGGATGTGAAAAATGAAGCAGAAGCATACATGCTTAAAGAGTTGTCTCTGTTGAAATGGCAAGAGAAGGCTACAAAGCTAGCTGTTGACGATACAAGTGGAAAAATGGATGAAGTACAAGTGGGTGTTGCTACCCTAGAAGAAAATCTTAAGGCAGAAAGGGATAAAATCCAAGAAAACATACAAATTCTGAAAGAGCTTGAAACTAAGTACAACAGCTACACGAAAAGACAAGAGGAGCTAGATAATGATATGAGGAAATGTAAGGAAGAATTCAAGGAGTTTGAGAGGCAGGATGTCAAGTATCGGGAAGATTTTAAGCACATGAACCAGAAGATCAAGAAGCTGGAGGATAAAGTGCAAAAGGATTCATCAAGAATTGAAGCTCTTGTAAAAGAGGGTGAAGACTCAAATGATATGATACCAAAACTCGAGGATAATATCCCTAAACTGCAAACATTGTTGCTTGATGAGGAGAAGATCTTAGAAGAAATCACCGAGAGTTCTAAAGTTGAAACTGAGAAATTCCGCTCTGAGCTTGCTAAGTTTCGTGTGGAGCTTGAACCTTGGGAAAAAGATTTGATCGAGCACAAGGGAAAGCTTGAAGTTGCATCCAGTGAGGCGAAGCTTCTAAATGAGAAGCATGAAGGTGCTAGTGAAGCCTTTAAAGATGCTCAAAATCAGATGAAAAGTATATCAGAAACAATTAAATCAAAAACGGCAAGCATTTCTCAAATTAAGAGTGATATAGAAAAGAGCAAGTCTGAAGCTTTAGAAGCTCACAGAGTGGAAGAAGAATGTATCAAAGAACAAGATGCCCTGATTCCCCTTGAACAAGATGCTAGACAGAAGGTTGCTGAACTGAAGTCTGTTTTGGATTCAGAGAAGAGCCAGGGATCAGTTCTAAAAGCAATCATGAAAGCTAAGGAAACCAGACAAATAGAAGGAATATATGGACGCATGGGTGACCTAGGTGCTATTGATGCAAAGTTTGACGTTGCAATATCAACAGCATGTTCTGGGCTTGACTATATTGTGGTGGAAACAACAAATGCCGCACAGGCCTGTGTTGAGTTACTTCGTAGAGAGAATCTTGGCGTTGCTACTTTCATGATATTGGAGAAGCAAGCTAATCATCTTTCAAACATGAAAAAGAGTGTGAGCACTCCAGAGGGGGTTCCCCGCCTTTTTGATTTAGTAAAGGTTCAAGATGAAAGAATGAAACTTGCTTTCTTTGCAGCACTTAGAAACACAGTTGTTGCTAAGGATCTTGACCAGGCAACACGCATAGCATATGGTAAAAACAATGAGTTTTGGCGAGTTGTTACTCTTGATGGTGCACTTTTTGAACAATCTGGAACAATGAGTGGTGGGGGTGGTAAGCCCAAGGGTGGGAAGATGGGCACATCTATTCGAGCTTCAAATGTGTCTGGTGAAGCCGTTGCAACTGCTGAGAAGGAATTGTCTGGATTGACTGATAAATTGAATGCAATTCGCCAAAGAATGGTGGATGCTGTGAAACAATATCAGGCCGCGGAAAAAACTATTGCTGCTTTGGATATGGAGCTGGCTAAAAGCCAGAAGGAGGTTGACAGTTTAAACTCGCAACATAGTTATATTGAAAGACAACTTGGTTCCCTTGAAGCTGCATCAAAGCCACAAGAGAATGAGCTTGATAGATTGAAAGAGCTGAAGAAGATTATTTCTGCAGAAGAAAGAGAGATTAATAGACTTACTGATGGATCTAAAAAACTGAAGGAAAAGGTTTCGGAGCTTCAGAGGAATATAGAGAATGCTGGTGGTGAAAAATTAAAATCCCAGAAGTTGAAAGTCCAGAAAATTCAGTCTGATATTGACAAGACCAGCTCAGAGATTAACCGTCACAAGGTTCAAATAGAGACGGGACAAAAGATGATGAAGAAGTTGACCAAAGGAATAGAGGATTCAAAGAAGGAGAAAGAACGGTTAACTGAGGAGAAAGAAAAGTTAAAAGGAACTTTCAAAGAAATAGAGCAGAAAGCATTTGCTGTTCAAGAGAATTATAAGAAAACACAAGAGATGATTGACAAACATCGGGATGTCTTAGAGGAAGCAACGTCTGAGCATAATAAGATGAAAAAAGCAGTGGACGAATTGCGTGCATCTGAGGTTGATGCTGACTTTAAATTAAAAGACATGAAGAAAGCATATAAAGAATTGGAAATAAAGGGGAAAGGTTACAGGAAAAGACTAGATGAGTTGCAAACTGCTCTTTCCAAGCATCTTGAGCAAATTCAGGTAGATTTAGTGGATCATGAAAAGGTACAGGCTACATTGGCTGAAGAACATCTTAATGCTGCTTGTGACTTGAAAAAGGCCTGTGAAACGGTCGCATTGCTTGAAGCACAACTGAAAGAGATGAATCCAAATCTTGATTCTATTGCCGAGTATCGGAAGAAGGTATCGTTGTACAATGCGCGAGTTGAAGAACTTAATGCAGTCACTCAAGAGCGGGATGATATAAAGAAGCAATATGATGAATTGAGAAAGAAAAGATTGGATGAGTTTATGGAAGGATTTAATGCCATATCATTAAAGTTAAAGGAAATGTACCAGATGATTACACTTGGAGGTGATGCTGAACTCGAGCTTGTGGATTCTTTGGATCCTTTCTCTGAAGGCGTTGTATTCAGTGTCAGACCACCAAAGAAAAGCTGGAAAAATATTGCTAACTTATCGGGTGGTGAAAAGACTCTTAGCTCATTGGCTCTTGTATTTGCTCTTCATCATTATAAGCCTACACCGCTTTATGTAATGGATGAAATCGACGCCGCTCTGGACTTCAAGAATGTATCTATCGTTGGGCATTATGTGAAAGACAGGACTAAGGATGCTCAGTTCATTATCATTAGTCTAAGGAACAATATGTTCGAATTGGCTGATAGACTTGTTGGTATTTATAAAACTGATAATTGCACAAAGAGCATCACTATTGATCCGTGCAGTTTTGTCGTTTGCAAGAAGGGTGCATGA 3711 0.3975 MESQADSARESTTRPRLFIKEMVMQNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSSNHQNLDSAGVSVHFQEIVDTEDGTYEAVPGSDFVIKRVAFRDNSSKYYINNRSSNFTEVTKILKGKGVDLDNNRFLILQGEVEQISLMKPKSQGPHDEGFLEYLEDIIGTNKYVEKIDESYKQLESLNERRSGVVQMVKLSEKERDSLEDVKNEAEAYMLKELSLLKWQEKATKLAVDDTSGKMDEVQVGVATLEENLKAERDKIQENIQILKELETKYNSYTKRQEELDNDMRKCKEEFKEFERQDVKYREDFKHMNQKIKKLEDKVQKDSSRIEALVKEGEDSNDMIPKLEDNIPKLQTLLLDEEKILEEITESSKVETEKFRSELAKFRVELEPWEKDLIEHKGKLEVASSEAKLLNEKHEGASEAFKDAQNQMKSISETIKSKTASISQIKSDIEKSKSEALEAHRVEEECIKEQDALIPLEQDARQKVAELKSVLDSEKSQGSVLKAIMKAKETRQIEGIYGRMGDLGAIDAKFDVAISTACSGLDYIVVETTNAAQACVELLRRENLGVATFMILEKQANHLSNMKKSVSTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRIAYGKNNEFWRVVTLDGALFEQSGTMSGGGGKPKGGKMGTSIRASNVSGEAVATAEKELSGLTDKLNAIRQRMVDAVKQYQAAEKTIAALDMELAKSQKEVDSLNSQHSYIERQLGSLEAASKPQENELDRLKELKKIISAEEREINRLTDGSKKLKEKVSELQRNIENAGGEKLKSQKLKVQKIQSDIDKTSSEINRHKVQIETGQKMMKKLTKGIEDSKKEKERLTEEKEKLKGTFKEIEQKAFAVQENYKKTQEMIDKHRDVLEEATSEHNKMKKAVDELRASEVDADFKLKDMKKAYKELEIKGKGYRKRLDELQTALSKHLEQIQVDLVDHEKVQATLAEEHLNAACDLKKACETVALLEAQLKEMNPNLDSIAEYRKKVSLYNARVEELNAVTQERDDIKKQYDELRKKRLDEFMEGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITIDPCSFVVCKKGA* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4403 1236 Gene3D - 712 841 - -
Tpr4g4403 1236 Gene3D - 259 423 - -
Tpr4g4403 1236 SUPERFAMILY Smc hinge domain 512 701 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tpr4g4403 1236 PANTHER - 11 1214 - -
Tpr4g4403 1236 Gene3D - 17 224 IPR027417 -
Tpr4g4403 1236 Coils Coil 441 461 - -
Tpr4g4403 1236 CDD ABC_SMC4_euk 17 177 IPR041738 GO:0005524|GO:0016887
Tpr4g4403 1236 Coils Coil 339 366 - -
Tpr4g4403 1236 PIRSF SMC 16 1233 IPR024704 GO:0005524|GO:0016887
Tpr4g4403 1236 SMART SMC_hinge_2 548 664 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tpr4g4403 1236 Coils Coil 269 331 - -
Tpr4g4403 1236 Coils Coil 511 531 - -
Tpr4g4403 1236 Coils Coil 787 835 - -
Tpr4g4403 1236 Gene3D - 1050 1228 IPR027417 -
Tpr4g4403 1236 Coils Coil 956 983 - -
Tpr4g4403 1236 Gene3D - 529 696 - -
Tpr4g4403 1236 Coils Coil 872 906 - -
Tpr4g4403 1236 Coils Coil 223 246 - -
Tpr4g4403 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 1212 IPR027417 -
Tpr4g4403 1236 Coils Coil 714 769 - -
Tpr4g4403 1236 Pfam SMC proteins Flexible Hinge Domain 548 664 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tpr4g4403 1236 Pfam RecF/RecN/SMC N terminal domain 18 1220 IPR003395 -
Tpr4g4403 1236 Gene3D - 607 694 - -
Tpr4g4403 1236 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 4 11 1214 - -
Tpr4g4403 1236 Coils Coil 1040 1077 - -
Tpr4g4403 1236 Coils Coil 914 948 - -
Tpr4g4403 1236 CDD ABC_SMC4_euk 1128 1222 IPR041738 GO:0005524|GO:0016887
Tpr4g4403 1236 SUPERFAMILY Tropomyosin 715 874 - -
Tpr4g4403 1236 Coils Coil 844 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4403 Tpr-Chr4 51394846 51407846 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4403 K06675 - gmx:100778712 2070.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4403 4 51394846 51407846 Tpr4g4403 4 51394846 51407846 ECH