Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4386 ATGTTTGTGAAGAAACTCGTTGAGAAAGCTAATTCCATCAAAAAGCCTGGTGGAAATTCACCAGAAGGGTTAAAAGCTAGTGATGTGGATCCACGAGTGGTATTTCATCAAGGGATACCATCAGGTGCTGCCAAGTTTGCCTATGATCCCATTCAGAAGATACTTGCTCTTTCTACAAAGGATGGCCAGATTAAACTATACGGAAAAGACAATGCTCAAGCTGTGCTTGATTCTAGTGAGAATCTACCTAGCAAGTTTTTACAGTTCATCCAGAACCAAGGCATTCTTTTAAATGTCACTTCCAATAATCATATCGAGGTTTGGGACATAGAGAAGAAACTGTTGTCTGATGTGTATGTTGCTAAAGCAGAAACCACTAGTTTTGCAGTCATTCAACATAGCCTCTATATGTATATTGGACATTTTAATGGTAATATATCGGTTTTGAAGCTTGAACAAGATCCATTGCATATAGTTAAAACGAAATACACCATACCGTTTTCTGCTTCCTATGGGAATTCTGAAGTGCCTGATGATACTACTGTGATGCATATACTGCCTCAACCAGCAGCTGAAAGTAAGAGGGTTCTTGTAATCTTTCGAAATGGCCAAATAATATTATGGGATATTCAAGAAAGCAGAACTATTTTCAGAACTGGTGGAAACATTTTGCAACCATTGCATAATAATGAAACAAAGAAAGTGAGTTCTGCGTGTTGGTCGTGTCCTTTTGGAAGTAAAATAGTGGTTGGATACAACAATGGAGAAATCTTCATTTGGAGCATCCCTTCTCTAAATATAGGAAATGGTTCTTCTGCATCTGAGTATTATAGTAGTCAAAGCACTCCTTTGCTCAAACTTAACTTAGGATACAAGTCAGAAAAAATTTCTATAGCATCAATTAAATGGCTTTATGCTGGAGGAAAGGCTAGTCGATTATATGTAATGGGAGCTTCTGATCATGCCAGTTCAAACTTGTTACAGGTAGTGTTGTTGAATGAGCATACAGAATCTCGTACGATTAAGCTGGGACTTCTTTTGTCCGAATGTTGTGTCGACATGGAGATTATATCAACTTCAACTGAGCAAGGCAAACAGCATAAACAAGATTCTTTCCTTTTGCTAGGGAAGTCAGGCCATGTGTATCTATATGATGATACTTTCATTGAAAGGTATCTGCTACAAAGCCAATCTAAGTCTACACCTTCACTTCCTAAGGACGTGATTGCGAAGTTACCACTAGCAGATTCAAGCATCACAACATCAAAGTTCATTTCCAACAATTCCAATGTGTTTTATTCTGAAGATGAGTACTACAGGCAGCTGGTGAAAAATCATCCACTTTTTGTTCCTGTTGAAACAAATCAAAAAGATGGAATTAGTCCAAGTTCTGCAAAATTTTCTGGATTTTCAAAAGTTCAAAACTTGTATATAACTGGACACAGTAATGGAGCTGTAAACTTCTGGGATGCTTCATGCCCTCTTTTCACCCCAATTTTGCAATTAAAACAACAGAGTGAAAATGACTTTTCGCTAAGTGGTATACCCTTGACAACATTGTACTTTGATATCAACTCTCCTCTTCTTGTTACCGGTGACCAAAATGGAACGGTTCGCATTTTTAGATTCAAACCTGAACCATATGCCACCAACATCTTTAGTGGTTCAAAGAAAGGGATTGATCATATTATCCAAAGTGTGAAAATTGTAAAGATTAACGGTTCCATAACTACTGTGAACATTGATCATAGCTCGACGCGTCTTGCAGTTGGTTCTGATCAAGGACATGTTTCGGTTTTCAACATGGATGGCCCAACTTTGTCATATCAGAAACATATTGCAAGTGAAATTGCTTCTGGTATCACATCTCTGCAGTTCGTAACATGCAGTTTGCATGGTTTTGATAAAAACATTTTAGCCGTCGGAACAAAAGATTCTTCTGTTCTAGCACTTGATAACGAAACTGGTAACATGATGAGCACTGGAACCGTTCAACCTAAGAAACCCTCGAAAGCTCTGTTTGTGCAGGTGTTTGATGGACAAGTTGAACAATTAACGGGATCGGTTACGAAAGATGGATTCGACTTGAGGGAAGGGAATAATATTGAGAATGCGACAACAAAGCAATTGTACATTCTGCTTTGTTCAGAGAAAGCTTTATATGTCTATTCATTAGTGCATGCAATTCAGGGAGTTAAAAAGGTGCTTCACAAGAAGAAGTTTCATTCCTCTTCCTGTTGTTGGGCATCAACATTTTACAGTCCCTCTGGTGTTGGGCTTGTACTCCTTTTCACCGACGGAAAAGTAGAATTAAGGTCTTTTCCAGAGTTATCCCTGATTGTGGAGACTTCAATTAGAGGTTTCAATTATTCACCTTCAAAATCAAAGTCATTTTCTGATTGGCAAATATGTTCTTCATCCAAAGGAGATATTGTTTTGGTAAATGGAGACCAAGAAATTTTTGCTGTCTCAGTGTTGGTCCAAAGGAGTATTTTCAGGATTTTGGATTCTGTTAGCTGCATCTACACGAAAGAAATGATGCTGTCACAAGAAGAGCTTATCCCTGCAACAGTCATTCATAAGGAAAAGAAAAAGGGTATATTCAGCTCTTTCTCTGTCGGTAAAGAAAAGCATGCCCCCCTCATGGAAACAGAAGATTCTAGAGAAAGTATCCGAGAACTCTCTGTGATCTTTTCAAAAGAAAATTTTCCTTGTGATGCTGATGATAATGATAACCTGACTATTGATGAAGACGAGGTCGAGTTAAACATAGATGACATTGACCTCGATGATCATGTAGAAAAACGTAAAGATCATGGTATATTGGGACTTGGAGCTCTTAATAAGAAGAAATTGACCGGAAAGTTTAATGCTCTAAAAGGAAGATTGAAAGAAATGAAGGGCAACATCCAGAAAACATCAGTTAAGGAAGAGCAACAAGAAGAGCAACCTGCTACAGTCGATCAAATTAAGAAGCGATACGGGTTTTCTTCATCTTCCAATGAAACAAGTGTTGCTAAAATGGCAGAAAGCAAGCTACAAGAGAACTTGAAAAAATTACAGGGTATTAACTTAAGAACTACAGAAATGCAAGATACAGCAAAATCATTTTCATCGATGGCAAACCAAGTACTGCGAACTGCTGAACAGCAACAAGACAAAAGAAGTTGA 3171 0.3797 MFVKKLVEKANSIKKPGGNSPEGLKASDVDPRVVFHQGIPSGAAKFAYDPIQKILALSTKDGQIKLYGKDNAQAVLDSSENLPSKFLQFIQNQGILLNVTSNNHIEVWDIEKKLLSDVYVAKAETTSFAVIQHSLYMYIGHFNGNISVLKLEQDPLHIVKTKYTIPFSASYGNSEVPDDTTVMHILPQPAAESKRVLVIFRNGQIILWDIQESRTIFRTGGNILQPLHNNETKKVSSACWSCPFGSKIVVGYNNGEIFIWSIPSLNIGNGSSASEYYSSQSTPLLKLNLGYKSEKISIASIKWLYAGGKASRLYVMGASDHASSNLLQVVLLNEHTESRTIKLGLLLSECCVDMEIISTSTEQGKQHKQDSFLLLGKSGHVYLYDDTFIERYLLQSQSKSTPSLPKDVIAKLPLADSSITTSKFISNNSNVFYSEDEYYRQLVKNHPLFVPVETNQKDGISPSSAKFSGFSKVQNLYITGHSNGAVNFWDASCPLFTPILQLKQQSENDFSLSGIPLTTLYFDINSPLLVTGDQNGTVRIFRFKPEPYATNIFSGSKKGIDHIIQSVKIVKINGSITTVNIDHSSTRLAVGSDQGHVSVFNMDGPTLSYQKHIASEIASGITSLQFVTCSLHGFDKNILAVGTKDSSVLALDNETGNMMSTGTVQPKKPSKALFVQVFDGQVEQLTGSVTKDGFDLREGNNIENATTKQLYILLCSEKALYVYSLVHAIQGVKKVLHKKKFHSSSCCWASTFYSPSGVGLVLLFTDGKVELRSFPELSLIVETSIRGFNYSPSKSKSFSDWQICSSSKGDIVLVNGDQEIFAVSVLVQRSIFRILDSVSCIYTKEMMLSQEELIPATVIHKEKKKGIFSSFSVGKEKHAPLMETEDSRESIRELSVIFSKENFPCDADDNDNLTIDEDEVELNIDDIDLDDHVEKRKDHGILGLGALNKKKLTGKFNALKGRLKEMKGNIQKTSVKEEQQEEQPATVDQIKKRYGFSSSSNETSVAKMAESKLQENLKKLQGINLRTTEMQDTAKSFSSMANQVLRTAEQQQDKRS* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4386 1056 Pfam Lethal giant larvae(Lgl) like, C-terminal 588 831 IPR013905 -
Tpr4g4386 1056 SUPERFAMILY WD40 repeat-like 517 814 IPR036322 GO:0005515
Tpr4g4386 1056 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1052 - -
Tpr4g4386 1056 SMART WD40_4 28 68 IPR001680 GO:0005515
Tpr4g4386 1056 SMART WD40_4 563 601 IPR001680 GO:0005515
Tpr4g4386 1056 SMART WD40_4 220 261 IPR001680 GO:0005515
Tpr4g4386 1056 SMART WD40_4 602 652 IPR001680 GO:0005515
Tpr4g4386 1056 SMART WD40_4 503 542 IPR001680 GO:0005515
Tpr4g4386 1056 SMART WD40_4 405 490 IPR001680 GO:0005515
Tpr4g4386 1056 Gene3D - 462 825 IPR015943 GO:0005515
Tpr4g4386 1056 MobiDBLite consensus disorder prediction 1031 1056 - -
Tpr4g4386 1056 CDD R-SNARE_STXBP5_6 989 1046 - -
Tpr4g4386 1056 MobiDBLite consensus disorder prediction 1031 1049 - -
Tpr4g4386 1056 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1052 - -
Tpr4g4386 1056 Coils Coil 949 983 - -
Tpr4g4386 1056 SUPERFAMILY WD40 repeat-like 46 608 IPR036322 GO:0005515
Tpr4g4386 1056 Gene3D - 44 343 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4386 Tpr-Chr4 51143679 51154007 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4386 - - gmx:100793138 1642.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4386 4 51143679 51154007 Tpr4g4386 4 51143679 51154007 ECH
Tpr2g1209 2 14150790 14160184 Tpr4g4386 4 51143679 51154007 PCT