Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4303 ATGTTGCAACAAGAGATGTGGAATGCTCCTCCTGGTTTCAGACCCTCCAAATCTGCACCATCTTCACCTGCAAAACCTCTTGGTGTTCCCAGAACTCGTTCTGAATCTTTTCACATCACTCATAAGGTTCCTGTTGGTGATTCTCCTTATGTTAGAGCCAAAAACGTTCAGTTGGTGGAAAAGGATCCGGAGAGAGCAATTCCATTGTTTTGGGCAGCGATAAATGCGGGAGATAGAGTGGATAGTGCTTTGAAAGATATGGCTATTGTTATGAAGCAACAGAATAGGGCTGAAGAAGCTATTGAAGCTATTAAGTCATTAAGAAGTAGATGCTCAGATCAAGCCCAAGAATCCCTTGATAATATCCTCTTGGATCTCTATAAGAGATGTGGTAGACTTGATGACCAAATTGGTCTATTGAGGCACAAGCTGTATTTAATCCAACAAGGGTTGGCTTTCAATGGCAAGCGCACAAAGACTGCTAGATCTCAAGGGAAGAAGTTTCAAGTCTCAGTGGAACAAGAAGCCACTAGGTTATTGGGAAACTTAGGATGGGCACTAATGCAGCAAAACAACTACATTGAAGCAGAAGAAGCCTATCGTCGCGCACTTTGCCTAGCTCCGGACAACAACAAGATGTGCAATTTAGGTATTTGTTTGATGAAACAAGGAAGAATAGCTGAAGCAAAAGAAACTCTCCATAGAGTGAAACCTGCAGTTACAGATGGACCAAGAGGCTCAGATTCTCATCTGAAAGCCTATGAAAGAGCACAACAAATGCTTAGGGATCTCGAGTCCGAAATGATGAACAAAGGAGGAGTTGATAGGATTGAACAAAGTAGACTCTTTGAAGCTTTTCTTGGTTCTTCATCAATTTGGCAACCTCAGCCTTGTAAGGATCAAATTCACACAAGCTTGCCACCAATTAGAACAACATCAGCAACTCAAGATGAATTTGGAGATGAAAACATCAATTCCAACATAGTGAAAAATCACATAGCACAACCACACAAGTTTACTCCTTTGGTGAACAACTCACTCAATGTTGCAGCTCCACCGTTTTATGCAGCGAAACCGTCTTTGAAGGAATCATTGACGAAAGAAACAAATGAGAATTTGAATCTCTCTGAGACACTGAAGAGAACAAGGTCTGGAAATGCTGCAGGATCAGTGAGAGTGAATGATGTGAACAGCAACAAGGTGAATGTGGAATTAGGTGTGCCTGTGCCTGGGAGCAAAGCTAGAAGGTTGTCATTTGAGAAGAATAAGTTGTGTGATATGTTACCTGACACTAAGGATTTTGAAGATGCTATTCTTTCTGCGATTTTTGCGCCTTCAAATGAGTTGGAGAATGAAAATGCTACCACTTCTGGGATTTTCTCGAAGAAAGTTGATAGGAGGAGGCTTAAGGTTTTCCAAGATATTACACTATCTTTGAGTCCAAAGGCAAAAGCTTGA 1458 0.4136 MLQQEMWNAPPGFRPSKSAPSSPAKPLGVPRTRSESFHITHKVPVGDSPYVRAKNVQLVEKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIGLLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALCLAPDNNKMCNLGICLMKQGRIAEAKETLHRVKPAVTDGPRGSDSHLKAYERAQQMLRDLESEMMNKGGVDRIEQSRLFEAFLGSSSIWQPQPCKDQIHTSLPPIRTTSATQDEFGDENINSNIVKNHIAQPHKFTPLVNNSLNVAAPPFYAAKPSLKESLTKETNENLNLSETLKRTRSGNAAGSVRVNDVNSNKVNVELGVPVPGSKARRLSFEKNKLCDMLPDTKDFEDAILSAIFAPSNELENENATTSGIFSKKVDRRRLKVFQDITLSLSPKAKA* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4303 485 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Tpr4g4303 485 Coils Coil 90 117 - -
Tpr4g4303 485 SUPERFAMILY TPR-like 60 235 IPR011990 GO:0005515
Tpr4g4303 485 SMART tpr_5 177 210 IPR019734 GO:0005515
Tpr4g4303 485 Gene3D Tetratricopeptide repeat domain 55 239 IPR011990 GO:0005515
Tpr4g4303 485 Coils Coil 247 267 - -
Tpr4g4303 485 Pfam Tetratricopeptide repeat 187 245 - -
Tpr4g4303 485 MobiDBLite consensus disorder prediction 1 33 - -
Tpr4g4303 485 PANTHER PROTEIN POLLENLESS 3-LIKE 2 6 480 IPR044961 -
Tpr4g4303 485 PANTHER PROTEIN POLLENLESS 3-LIKE 2 6 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4303 Tpr-Chr4 50248956 50251520 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4303 - - gmx:100788369 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4303 4 50248956 50251520 Tpr4g4303 4 50248956 50251520 ECH