Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4262 ATGGGGGAAGGTAGAGAAGGTGATTGGGAGTGTAGTAGTTGTAACAACAGAAACTACGCTTTCAGATCATTCTGTAACCGTTGCAAACAACCACGTCTTCTCGTTGATACCAAAACCCCTGCTGATTCCAAGTGGCTTCCTCGTATCGGCGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAGAAGTGCGGACAACCAAAGGAAGTAGCGGCCATGCCAGCAATTGCAATGACTGGAGCATCCTTCCCTGCTTATCCACACTATTTTTCCAGGGCTCCCGGAGGACCAGAACAAAGGATGAATATTGGAAATGGTGTGCCACCGCAGTCGCTGAATTTGAATTATAATTGGCCTGTTACTGGAGCAGGAAAGTTTGGTGTCCATCCAGTTTCCATATGGCCACCAGGTGCAAATTATAGTTCTGGACATCCTTATGAAAATTCTACGAGTCAGAACCCATCTACTCCAAATGGTTGGCGTAATGGGGACTGGGTCTGTAACTGCGGCTTCCATAATTACTCCTCACGCTCACAGTGTAAAAAATGCAATGCTTCTCCACCAGCACTTGGCACAAAACGGTTAGCTTCTGAAGAATTGGTTTATGACTGGGATAACAAGAGATTGAACGTAGGACCTACAAATGGTCAGCAGCAAACTTATACAAGTTTAGAGCTAGTAGGGACCAGTGCAGAACCAAAACCTGCAATCTTCCCTGGTTACATTGGCATTAACTCTAGTTCGGCACCAATTTTACCAATGCCTCAACTCTTTCCAATTCCACCTCAAGTTTCTTCTACTGCACTCCTTGGAAAAGGAGCTAAGCAATGGCGAAGTGGTGATTGGATGTGCACAAATTGCAACAATCATAATTATGCATCCAGACTAGAGTGTAACAGGTGTAAAACACTCAGAGTAGCACCGATGCAACCTGTCAACGTTGTGTAA 969 0.4499 MGEGREGDWECSSCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEVAAMPAIAMTGASFPAYPHYFSRAPGGPEQRMNIGNGVPPQSLNLNYNWPVTGAGKFGVHPVSIWPPGANYSSGHPYENSTSQNPSTPNGWRNGDWVCNCGFHNYSSRSQCKKCNASPPALGTKRLASEELVYDWDNKRLNVGPTNGQQQTYTSLELVGTSAEPKPAIFPGYIGINSSSAPILPMPQLFPIPPQVSSTALLGKGAKQWRSGDWMCTNCNNHNYASRLECNRCKTLRVAPMQPVNVV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4262 322 ProSiteProfiles Zinc finger RanBP2 type profile. 285 314 IPR001876 -
Tpr4g4262 322 PANTHER ZINC FINGER PROTEIN 166 223 - -
Tpr4g4262 322 PANTHER ZINC FINGER PROTEIN 3 133 - -
Tpr4g4262 322 PANTHER ZINC FINGER PROTEIN 268 321 - -
Tpr4g4262 322 Gene3D - 3 33 - -
Tpr4g4262 322 Gene3D - 42 77 - -
Tpr4g4262 322 Gene3D - 162 196 - -
Tpr4g4262 322 Gene3D - 280 314 - -
Tpr4g4262 322 ProSiteProfiles Zinc finger RanBP2 type profile. 168 196 IPR001876 -
Tpr4g4262 322 Pfam Zn-finger in Ran binding protein and others 5 32 IPR001876 -
Tpr4g4262 322 Pfam Zn-finger in Ran binding protein and others 285 312 IPR001876 -
Tpr4g4262 322 Pfam Zn-finger in Ran binding protein and others 48 76 IPR001876 -
Tpr4g4262 322 SUPERFAMILY Ran binding protein zinc finger-like 279 314 IPR036443 -
Tpr4g4262 322 SUPERFAMILY Ran binding protein zinc finger-like 163 193 IPR036443 -
Tpr4g4262 322 PANTHER OS04G0110600 PROTEIN 268 321 - -
Tpr4g4262 322 PANTHER OS04G0110600 PROTEIN 3 133 - -
Tpr4g4262 322 PANTHER OS04G0110600 PROTEIN 166 223 - -
Tpr4g4262 322 SUPERFAMILY Ran binding protein zinc finger-like 5 33 IPR036443 -
Tpr4g4262 322 ProSiteProfiles Zinc finger RanBP2 type profile. 48 77 IPR001876 -
Tpr4g4262 322 ProSitePatterns Zinc finger RanBP2-type signature. 52 71 IPR001876 -
Tpr4g4262 322 SUPERFAMILY Ran binding protein zinc finger-like 42 76 IPR036443 -
Tpr4g4262 322 ProSitePatterns Zinc finger RanBP2-type signature. 289 308 IPR001876 -
Tpr4g4262 322 ProSitePatterns Zinc finger RanBP2-type signature. 9 28 IPR001876 -
Tpr4g4262 322 ProSiteProfiles Zinc finger RanBP2 type profile. 5 34 IPR001876 -
Tpr4g4262 322 SMART zf_4 287 311 IPR001876 -
Tpr4g4262 322 SMART zf_4 170 193 IPR001876 -
Tpr4g4262 322 SMART zf_4 7 31 IPR001876 -
Tpr4g4262 322 SMART zf_4 50 74 IPR001876 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4262 - - lja:Lj4g3v1037490.1 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4262 4 49771400 49774498 Tpr4g4262 4 49771400 49774498 ECH